SMTL ID : 9nwy.1

Discovery of MTA-cooperative PRMT5 Inhibitors from Co-factor directed DNA-Encoded Library Screens

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 01: 2-amino-3-methyl-N-(2-methylpropyl)-N-{[5-(trifluoromethyl)pyridin-2-yl]methyl}quinoline-6-carboxamide

01.1: 17 residues within 4Å: Chain A: F.313, Y.317, Q.322, L.325, T.336, V.339, F.340, K.346, E.448, L.450, E.457, V.516, F.590, S.591, W.592, F.593 Ligands: MTA.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.325, A:T.336, A:F.340 Hydrogen bonds: A:L.450, A:E.457, A:F.593 pi-Stacking: A:Y.317, A:F.340, A:F.593

1 x MTA: 5'-DEOXY-5'-METHYLTHIOADENOSINE(Non-covalent)

MTA.2: 16 residues within 4Å: Chain A: P.327, L.328, Y.337, F.340, G.378, G.380, E.405, K.406, N.407, S.431, D.432, M.433, E.448, L.449, C.462 Ligands: 01.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.337, A:Y.337, A:G.380, A:K.406, A:N.407, A:D.432, A:M.433

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anderson, J. et al., From DNA-Encoded Library Screening to AM-9747 - an MTA-Cooperative PRMT5 Inhibitor with Potent Oral in vivo Efficacy. To Be Published

Release Date

2025-05-07

Peptides

Protein arginine N-methyltransferase 5: A
Methylosome protein 50: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein arginine N-methyltransferase 5

Methylosome protein 50

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