SMTL ID : 9q8y.2 (1 other biounit)

Structure of RNF38 RING with linchpin mutant R454Y in complex with Ubch5B-Ub

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.63 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain B: C.24, V.26, C.27, H.47, C.50 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.24, B:C.27, B:H.47, B:C.50 ZN.2: 6 residues within 4Å: Chain B: C.42, H.44, C.61, I.63, C.64, A.66 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.42, B:H.44, B:C.61, B:C.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakasone, M.A. et al., Tuning ubiquitin transfer by RING E3 ubiquitin ligases through the linchpin residue. To Be Published

Release Date

2025-07-30

Peptides

Ubiquitin-conjugating enzyme E2 D2: A
Isoform 2 of E3 ubiquitin-protein ligase RNF38: B
Ubiquitin-40S ribosomal protein S27a: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
G

Ubiquitin-conjugating enzyme E2 D2

Isoform 2 of E3 ubiquitin-protein ligase RNF38

Ubiquitin-40S ribosomal protein S27a

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