SMTL ID : 4v3k.1 (1 other biounit)

RNF38-UbcH5B-UB complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: A.1, L.2, K.3 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: N.78, N.80, S.82 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: R.89, S.90 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain A: Y.126, R.130 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.130, A:R.130 EDO.5: 2 residues within 4Å: Chain B: R.77, R.79 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:D.86 Hydrogen bonds: B:R.77, B:R.77

2 x ZN: ZINC ION(Non-covalent)

ZN.6: 4 residues within 4Å: Chain C: C.27, C.30, H.50, C.53 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.27, C:C.30, C:H.50, C:C.53 ZN.7: 4 residues within 4Å: Chain C: C.45, H.47, C.64, C.67 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.45, C:H.47, C:C.64, C:C.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buetow, L. et al., Activation of a Primed Ring E3-E2-Ubiquitin Complex by Non-Covalent Ubiquitin. Mol.Cell (2015)

Release Date

2015-04-08

Peptides

UBIQUITIN-CONJUGATING ENZYME E2 D2: A
POLYUBIQUITIN-C: B
E3 UBIQUITIN-PROTEIN LIGASE RNF38: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

UBIQUITIN-CONJUGATING ENZYME E2 D2

POLYUBIQUITIN-C

E3 UBIQUITIN-PROTEIN LIGASE RNF38

Related Entries With Identical Sequence