- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.00 Å
- Oligo State
- hetero-1-7-1-1-1-mer
- Ligands
- 8 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 7 x CA: CALCIUM ION(Non-covalent)
CA.3: 4 residues within 4Å:- Chain B: A.293, S.296, D.316
- Ligands: ATP.8
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:A.293, B:S.296, B:D.316
CA.6: 5 residues within 4Å:- Chain C: A.293, H.294, S.296, D.316
- Ligands: ATP.2
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:S.296, C:D.316
CA.10: 5 residues within 4Å:- Chain G: A.293, H.294, S.296, D.316
- Ligands: ATP.13
1 PLIP interactions:1 interactions with chain G- Metal complexes: G:S.296
CA.16: 5 residues within 4Å:- Chain K: A.293, H.294, S.296, D.316
- Ligands: ATP.5
3 PLIP interactions:3 interactions with chain K- Metal complexes: K:A.293, K:S.296, K:D.316
CA.20: 5 residues within 4Å:- Chain L: A.293, H.294, S.296, D.316
- Ligands: ATP.15
2 PLIP interactions:2 interactions with chain L- Metal complexes: L:A.293, L:S.296
CA.21: 5 residues within 4Å:- Chain M: A.293, H.294, S.296, D.316
- Ligands: ATP.18
3 PLIP interactions:3 interactions with chain M- Metal complexes: M:A.293, M:S.296, M:D.316
CA.24: 5 residues within 4Å:- Chain N: A.293, H.294, S.296, D.316
- Ligands: ATP.22
3 PLIP interactions:3 interactions with chain N- Metal complexes: N:A.293, N:S.296, N:D.316
- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 3 residues within 4Å:- Chain B: T.134, E.163
- Ligands: ATP.2
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:T.134
MG.7: 3 residues within 4Å:- Chain C: T.134, E.163
- Ligands: ATP.5
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:T.134
MG.9: 3 residues within 4Å:- Chain G: T.134, E.163
- Ligands: ATP.8
1 PLIP interactions:1 interactions with chain G- Metal complexes: G:T.134
MG.12: 3 residues within 4Å:- Chain I: T.132, E.161
- Ligands: ADP.11
1 PLIP interactions:1 interactions with chain I- Metal complexes: I:T.132
MG.14: 3 residues within 4Å:- Chain J: K.113, T.114
- Ligands: ATP.13
1 PLIP interactions:1 interactions with chain J- Metal complexes: J:T.114
MG.17: 4 residues within 4Å:- Chain K: T.134, E.163, T.165
- Ligands: ATP.15
1 PLIP interactions:1 interactions with chain K- Metal complexes: K:T.134
MG.19: 3 residues within 4Å:- Chain L: T.134, E.163
- Ligands: ATP.18
1 PLIP interactions:1 interactions with chain L- Metal complexes: L:T.134
MG.23: 3 residues within 4Å:- Chain M: T.134, D.222
- Ligands: ATP.22
1 PLIP interactions:1 interactions with chain M- Metal complexes: M:T.134
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.11: 20 residues within 4Å:- Chain I: A.126, P.127, G.128, V.129, G.130, K.131, T.132, Q.133, R.168, R.322, I.341, P.343
- Chain J: S.319, A.320, P.321, H.322, L.323, P.324, P.325
- Ligands: MG.12
12 PLIP interactions:10 interactions with chain I, 2 interactions with chain J- Hydrogen bonds: I:G.128, I:G.128, I:V.129, I:G.130, I:K.131, I:T.132, I:Q.133, I:R.322, I:R.322, J:R.94, J:H.322
- Salt bridges: I:K.131
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Greenhough, L.A. et al., Cryo-EM visualization of RAD51 filament assembly and end-cappingby XRCC3-RAD51C-RAD51D-XRCC2. To Be Published
- Release Date
- 2025-11-12
- Peptides
- DNA repair protein RAD51 homolog 4: A
DNA repair protein RAD51 homolog 1: BCGKLMN
DNA repair protein XRCC2: H
DNA repair protein RAD51 homolog 3: I
DNA repair protein XRCC3: J - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
FC
GG
EK
HL
IM
JN
KH
AI
CJ
D
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.00 Å
- Oligo State
- hetero-1-7-1-1-1-mer
- Ligands
- 8 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 7 x CA: CALCIUM ION(Non-covalent)
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Greenhough, L.A. et al., Cryo-EM visualization of RAD51 filament assembly and end-cappingby XRCC3-RAD51C-RAD51D-XRCC2. To Be Published
- Release Date
- 2025-11-12
- Peptides
- DNA repair protein RAD51 homolog 4: A
DNA repair protein RAD51 homolog 1: BCGKLMN
DNA repair protein XRCC2: H
DNA repair protein RAD51 homolog 3: I
DNA repair protein XRCC3: J - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
FC
GG
EK
HL
IM
JN
KH
AI
CJ
D