A8A2D2 | SWISS-MODEL Repository

A8A2D2 (MEND_ECOHS) Escherichia coli O9:H4 (strain HS)

2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase UniProtKB InterPro Interactive Modelling

556 aa; Sequence (Fasta) ; 9 identical sequences: Escherichia coli: P17109; Escherichia coli MS 85-1: A0AAN3SER3; Shigella sonnei: A0AAE5K3Z9; Shigella dysenteriae: A0AAN4CM10; Escherichia coli: C4ZUA7, E0IY48, J7QFW2, A0A140N580, B1X8X8

Available Structures

16 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
ThDP-Mn2+ complex of R413K variant of EcMenD soaked with 2-ketoglutarate for 5 min	5z2p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	1-556	99.82	4×TD6; 4×MN; 16×FMT;
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ThDP-Mn2+ complex of R395K variant of EcMenD soaked with 2-ketoglutarate for 5 min	5z2r PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	1-556	99.82	4×TD6; 4×MG; 15×FMT; 1×GOL;
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ThDP-Mn2+ complex of R395A variant of EcMenD soaked with 2-ketoglutarate for 5 min	5z2u PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	1-556	99.82	4×TD6; 4×MG; 4×FMT; 2×GOL;
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EcMenD-ThDP-Mn2+ complex structure soaked with 2-ketoglutarate for 2 min	5ej8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	1-556	100	2×TD6; 2×MN; 4×MG; 3×GOL; 7×EDO; 13×FMT;
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EcMenD-ThDP-Mn2+ complex soaked with 2-ketoglutarate for 21 s	5ej7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	1-556	100	2×TD6; 2×MN; 3×GOL;
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EcMenD-ThDP-Mn2+ complex soaked with 2-ketoglutarate for 2 min and soaked with isochorismate for 7 …	5eja PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	1-556	100	2×TD6; 2×MN; 2×GOL;
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ThDP-Mn2+ complex of R413A variant of EcMenD soaked with 2-ketoglutarate for 35 min	5ejm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	1-556	99.82	2×TD5; 2×MN; 2×GOL; 2×EDO;
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EcMenD-ThDP-Mn2+ complex soaked with 2-ketoglutarate for 2 min and isochorismate for 13 min	5ej9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	1-556	100	2×TPP; 2×MN; 2×GOL; 2×FMT;
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EcMenD-ThDP-Mn2+ complex soaked with 2-ketoglutarate for 15 min	5ej4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	1-556	100	2×TD6; 2×MN; 4×GOL; 2×FMT;
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Crystal structure of menaquinone synthesis protein MenD from E. coli in complex with oxoglutarate	3hww PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	1-556	99.81	2×AKG; 2×MG; 37×NA; 2×CL; 6×GOL;
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EcMenD-ThDP-Mn2+ complex soaked with 2-ketoglutarate for 2min then soaked with isochorismate for 2 …	5ej6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	1-556	100	2×TD6; 2×MN;
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EcMenD-ThDP-Mn2+ complex soaked with 2-ketoglutarate for 1.5 h	5ej5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	1-556	100	2×TD6; 2×MN; 2×GOL;
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Crystal structure of E.coli MenD, 2-succinyl-5-enolpyruvyl-6-hydroxy- 3-cyclohexadiene-1-carboxylat…	2jlc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	1-556	100.0	2×TPP; 2×MN;
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Crystal structure of menaquinone synthesis protein MenD from E. coli in complex with ThDP	3hwx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	1-556	99.82	3×NA; 2×TPP; 2×MG;
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Crystal structure of menD from E.coli	3flm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	1-556	99.81
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Crystal structure of E.coli MenD, 2-succinyl-5-enolpyruvyl-6-hydroxy- 3-cyclohexadiene-1-carboxylat…	2jla PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	1-556	100	2×TPP; 2×MN; 7×CL;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	5ejm.1.A	homo-2-mer	0.95	1-556	2×TD5; 2×MN;	99.82
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

A8A2D2 (MEND_ECOHS) Escherichia coli O9:H4 (strain HS)

2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase UniProtKBInterProInteractive Modelling

Available Structures

16 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase UniProtKB InterPro Interactive Modelling