E0IY48 (E0IY48_ECOLW) Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / LMG 11080 / NBRC13500 / NCIMB 8666 / NRRL B-766 / W)

2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase UniProtKBInterProInteractive Modelling

556 aa; Sequence (Fasta) ; 10 identical sequences: Escherichia coli: P17109; Escherichia coli MS 124-1: E1J4P5; Escherichia coli MS 85-1: E6BKL0; Escherichia coli: C4ZUA7, J7QFW2, A0A140N580; Escherichia coli 53638: A0A0E1T0N5; Escherichia coli O9:H4: A8A2D2; Escherichia coli: B1X8X8; Escherichia coli O18ac:H14: A0AA92JGV0

Available Structures

16 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
ThDP-Mn2+ complex of R413K variant of EcMenD soaked with 2-ketoglutarate for 5 min
5z2p
homo-4-mer1-556
4×TD6; 4×MN; 16×FMT;
Assess
ThDP-Mn2+ complex of R395K variant of EcMenD soaked with 2-ketoglutarate for 5 min
5z2r
homo-4-mer1-556
4×TD6; 4×MG; 15×FMT; 1×GOL;
Assess
ThDP-Mn2+ complex of R395A variant of EcMenD soaked with 2-ketoglutarate for 5 min
5z2u
homo-4-mer1-556
4×TD6; 4×MG; 4×FMT; 2×GOL;
Assess
EcMenD-ThDP-Mn2+ complex structure soaked with 2-ketoglutarate for 2 min
5ej8
homo-2-mer1-556
2×TD6; 2×MN; 4×MG; 3×GOL; 7×EDO; 13×FMT;
Assess
EcMenD-ThDP-Mn2+ complex soaked with 2-ketoglutarate for 21 s
5ej7
homo-2-mer1-556
2×TD6; 2×MN; 3×GOL;
Assess
EcMenD-ThDP-Mn2+ complex soaked with 2-ketoglutarate for 2 min and soaked with isochorismate for 7 …
5eja
homo-2-mer1-556
2×TD6; 2×MN; 2×GOL;
Assess
EcMenD-ThDP-Mn2+ complex soaked with 2-ketoglutarate for 2 min and isochorismate for 13 min
5ej9
homo-2-mer1-556
2×TPP; 2×MN; 2×GOL; 2×FMT;
Assess
ThDP-Mn2+ complex of R413A variant of EcMenD soaked with 2-ketoglutarate for 35 min
5ejm
homo-2-mer1-556
2×TD5; 2×MN; 2×GOL; 2×EDO;
Assess
EcMenD-ThDP-Mn2+ complex soaked with 2-ketoglutarate for 15 min
5ej4
homo-2-mer1-556
2×TD6; 2×MN; 4×GOL; 2×FMT;
Assess
Crystal structure of menaquinone synthesis protein MenD from E. coli in complex with oxoglutarate
3hww
homo-2-mer1-556
2×AKG; 2×MG; 37×NA; 2×CL; 6×GOL;
Assess
EcMenD-ThDP-Mn2+ complex soaked with 2-ketoglutarate for 2min then soaked with isochorismate for 2 …
5ej6
homo-2-mer1-556
2×TD6; 2×MN;
Assess
EcMenD-ThDP-Mn2+ complex soaked with 2-ketoglutarate for 1.5 h
5ej5
homo-2-mer1-556
2×TD6; 2×MN; 2×GOL;
Assess
Crystal structure of E.coli MenD, 2-succinyl-5-enolpyruvyl-6-hydroxy- 3-cyclohexadiene-1-carboxylat…
2jlc
homo-2-mer1-556
2×TPP; 2×MN;
Assess
Crystal structure of menaquinone synthesis protein MenD from E. coli in complex with ThDP
3hwx
homo-2-mer1-556
3×NA; 2×TPP; 2×MG;
Assess
Crystal structure of menD from E.coli
3flm
homo-2-mer1-556
Assess
Crystal structure of E.coli MenD, 2-succinyl-5-enolpyruvyl-6-hydroxy- 3-cyclohexadiene-1-carboxylat…
2jla
homo-2-mer1-556
2×TPP; 2×MN; 7×CL;
Assess

1 SWISS-MODEL model

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
5ejm.1.Ahomo-2-mer0.951-556
2×TD5; 2×MN;99.82
Assess