O14727 | SWISS-MODEL Repository

O14727 (APAF_HUMAN) Homo sapiens (Human)

Apoptotic protease-activating factor 1 UniProtKB InterPro STRING Interactive Modelling

1248 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4; Isoform 5; Isoform 6)

It is possible new templates exist for this target since these models were created.

Available Structures

14 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Apaf-1-Caspase-9 holoenzyme	5wve PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00004; P55211;	1-1248	100	7×DTP; 7×MG; 7×HEM;
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Active human apoptosome with procaspase-9	5juy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P55211; P62894;	1-1248	100.0	7×DTP; 7×HEC;
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An improved model of the human apoptosome	3j2t PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P62894;	105-1248	100	7×ATP; 7×HEM;
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Atomic structure of the Apaf-1 apoptosome	3jbt PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00004;	105-1248	100	7×DTP; 7×MG; 7×HEM;
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Crystal structure of Apaf-1 CARD and caspase-9 CARD complex	4rhw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P55211;	1-95	100	7×SO4; 2×CL;
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APAF-1 CARD IN COMPLEX WITH PRODOMAIN OF PROCASPASE-9	3ygs PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P55211;	1-95	100
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Structure of the CARD-CARD disk	5wvc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P55211;	1-95	100	11×IOD;
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Structure of the apoptotic protease-activating factor 1 bound to ADP	1z6t PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1-586	100.0	1×ADP;
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SOLUTION STRUCTURE OF APAF-1 CARD	1c15 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1-97	100
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SOLUTION STRUCTURE OF THE CASPASE RECRUITMENT DOMAIN (CARD) FROM APAF-1	1cww PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1-97	100
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CRYSTAL STRUCTURE OF THE APAF-1 CARD	1cy5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1-93	100	5×ZN; 1×BME;
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Rapid Folding and Unfolding of Apaf-1 CARD	2p1h PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1-92	100	6×ZN;
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CARD DOMAIN FROM APAF-1	2ygs PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1-92	100
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The Crystal Structure of Apaf from Biortus.	8xqk PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1-92	100	1×PO4;
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9 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
5juy.1.E	monomer	0.75	1-1248	1×DTP;	100.00
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3sfz.1.A	monomer	0.71	102-1248	3×GBL;	87.34
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7vh0.1.C	monomer	0.60	574-910		24.38
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2ymu.1.A	monomer	0.59	614-1155		32.50
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7o80.6.A	monomer	0.56	874-1206		22.92
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7bie.1.A	monomer	0.56	881-1214		33.55
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7bie.1.A	monomer	0.55	742-1082		32.81
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7bie.1.A	monomer	0.55	698-1041		32.91
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2ymu.1.A	monomer	0.52	608-1235		33.99
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

46 SWISS-MODEL models built on isoform sequence

Isoform	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	5juy.1.E	monomer	0.76	1-1237	1×DTP;	100.00
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Isoform 2	3sfz.1.A	monomer	0.71	96-1237	3×GBL;	87.39
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Isoform 2	7vh0.1.C	monomer	0.60	563-899		24.38
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Isoform 2	2ymu.1.A	monomer	0.59	603-1144		32.50
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Isoform 2	7bie.1.A	monomer	0.56	870-1203		33.55
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Isoform 2	4aow.1.A	monomer	0.56	861-1195		22.62
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Isoform 2	7bie.1.A	monomer	0.55	731-1071		32.81
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Isoform 2	7bie.1.A	monomer	0.55	687-1030		32.91
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Isoform 2	9j5v.1.A	monomer	0.53	612-1020		21.41
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Isoform 2	2ymu.1.A	monomer	0.51	597-1224		33.99
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Isoform 3	5juy.1.G	monomer	0.74	1-1194	1×DTP;	99.83
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Isoform 3	3sfz.1.A	monomer	0.71	97-1194	3×GBL;	86.01
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Isoform 3	7t6t.1.B	monomer	0.63	563-856		26.71
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Isoform 3	8q1n.1.A	monomer	0.60	597-899		28.77
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Isoform 3	7big.1.A	monomer	0.59	637-977		35.56
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Isoform 3	7bie.1.A	monomer	0.59	603-946		36.08
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Isoform 3	7bie.1.A	monomer	0.57	687-1028		33.33
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Isoform 3	7bie.1.A	monomer	0.56	827-1160		33.55
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Isoform 3	7bie.1.A	monomer	0.55	731-1070		34.37
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Isoform 3	7bed.1.A	monomer	0.55	597-979		27.89
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Isoform 3	6wdr.1.3	monomer	0.53	820-1154		22.59
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Isoform 4	5juy.1.E	monomer	0.74	1-1205	1×DTP;	100.00
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Isoform 4	3sfz.1.A	monomer	0.71	102-1205	3×GBL;	85.98
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Isoform 4	7t6t.1.B	monomer	0.63	574-867		26.71
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Isoform 4	8q1n.1.A	monomer	0.60	608-910		28.77
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Isoform 4	7big.1.A	monomer	0.59	648-988		35.56
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Isoform 4	7bie.1.A	monomer	0.59	614-957		36.08
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Isoform 4	7bie.1.A	monomer	0.57	698-1039		33.33
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Isoform 4	7bie.1.A	monomer	0.56	838-1171		33.55
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Isoform 4	8okf.1.A	monomer	0.56	608-990		28.67
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Isoform 4	7bie.1.A	monomer	0.55	742-1081		34.37
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Isoform 4	6wdr.1.3	monomer	0.54	831-1165		22.59
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Isoform 5	1z6t.1.A	monomer	0.81	1-594	1×ADP;	100.00
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Isoform 5	5juy.1.E	monomer	0.74	1-1171	1×DTP;	93.38
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Isoform 5	3sfz.1.A	monomer	0.71	102-1171	3×GBL;	81.69
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Isoform 5	8q1n.1.A	monomer	0.61	616-918		28.77
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Isoform 5	7big.1.A	monomer	0.60	656-996		35.56
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Isoform 5	7bie.1.A	monomer	0.59	622-965		36.08
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Isoform 5	7bie.1.A	monomer	0.59	846-1137		31.35
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Isoform 5	7bie.1.A	monomer	0.57	706-1047		34.16
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Isoform 5	7bie.1.A	monomer	0.56	750-1097		35.35
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Isoform 5	7bed.1.A	monomer	0.55	616-998		27.89
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Isoform 5	8smv.1.E	monomer	0.52	775-1168		17.82
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Isoform 5	6tji.1.A	monomer	0.51	654-1078		12.94
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Isoform 6	1z6t.1.A	monomer	0.81	1-335		96.12
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Isoform 6	5juy.1.E	monomer	0.81	1-335		96.12
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O14727 (APAF_HUMAN) Homo sapiens (Human)

Apoptotic protease-activating factor 1 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

14 Experimental Structures

9 SWISS-MODEL models

46 SWISS-MODEL models built on isoform sequence

Alignments

Background

Resolution

Apoptotic protease-activating factor 1 UniProtKB InterPro STRING Interactive Modelling