O43175 (SERA_HUMAN) Homo sapiens (Human)

D-3-phosphoglycerate dehydrogenase UniProtKBInterProSTRINGInteractive Modelling

533 aa; Sequence (Fasta)

Sequence Features

Add
 236
 265
 283Proton donor
 135R -> W (in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606949) VAR_059026 dbSNP
 140G -> R (in NLS1; dbSNP:rs587777770) VAR_071819 dbSNP
 163R -> Q (in NLS1; dbSNP:rs587777483) VAR_071820 dbSNP
 261V -> M (in PHGDHD; results in a four-fold decrease in substrate affinity and a slight increase in maximal enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs267606947) VAR_059027 dbSNP
 373A -> T (in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs201553627) VAR_059028 dbSNP
 377G -> S (in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606948) VAR_059029 dbSNP
 425V -> M (in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907988) VAR_013461 dbSNP
 490V -> M (in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907987) VAR_059030 dbSNP
 155-156NAD
 234-236NAD
 283-286NAD
 9-317D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
IPR006139PF00389
 112-285D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain
IPR006140PF02826

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRange
Crystal structure of human PHGDH complexed with Compound 1homo-2-mer ONV;EDO;6plf5-309
Assess
Crystal structure of human PHGDH complexed with Compound 15homo-2-mer ONS;MLT;6plg6-308
Assess
Crystal structure of PHGDH in complex with compound 15homo-2-mer SO4;K58;6rj36-307
Assess
Crystal structure of human 3-phosphoglycerate dehydrogenasehomo-2-mer MLT;NAD;2g766-307
Assess
Crystal structure of PHGDH in complex with compound 39homo-2-mer SO4;K5N;6rj56-307
Assess
Crystal structure of PHGDH in complex with compound 40homo-2-mer SO4;K52;6rj26-307
Assess
Crystal structure of PHGDH in complex with compound 9homo-2-mer K4T;SO4;6rih6-307
Assess
CRYSTAL STRUCTURE PHGDH IN COMPLEX WITH NADH AND 3-PHOSPHOGLYCERATE AT 1.77 A RESOLUTIONhomo-2-mer 3PG;NAI;6cwa7-305
Assess
Crystal structure of human 3-phosphoglycerate dehydrogenase in complex with NAD and L-Tartratehomo-2-mer TLA;NAD;5n6c8-306
Assess
The Crystal Structure of human PHGDH from Biortus.homo-2-mer NAD;7cvp7-305
Assess
Crystal structure of PHGDH in complex with BI-4924homo-2-mer K5K;6rj698-307
Assess
Crystal structure of human 3-phosphoglycerate dehydrogenase in complex with 1-methyl-3-phenyl-1H-py…homo-2-mer 9EZ;5nzo100-294
Assess
Crystal structure of human 3-phosphoglycerate dehydrogenase in complex with 3-Hydroxybenzisoxazolehomo-2-mer 9EW;5nzp100-294
Assess
Crystal structure of human 3-phosphoglycerate dehydrogenase in complex with N-(3-chloro-4-methoxyph…homo-2-mer 8NB;5n53100-294
Assess
Crystal structure of human 3-phosphoglycerate dehydrogenase in complex with 3-(1,3-oxazol-5-yl)anil…homo-2-mer 5AO;5nzq100-294
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Crystal structure of human 3-phosphoglycerate dehydrogenase in complex with 3-Chloro-4-fluorobenzam…homo-2-mer 9TW;5ofw100-294
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Crystal structure of human 3-phosphoglycerate dehydrogenase in complex with 5-amino-1-methyl-1H-ind…homo-2-mer 9TT;5ofm100-294
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Crystal structure of human 3-phosphoglycerate dehydrogenase in complex with 5-fluoro-2-methylbenzoi…homo-2-mer 9TZ;5ofv100-294
Assess

Homology models

Oligo-stateQMEANTemplateRangeSeq id (%)Ligands
homo-4-mer -1.60 3ddn.1.C5-523
34.39
Assess
homo-2-mer -3.49 2o4c.1.A7-347
26.05
Assess