P01130 | SWISS-MODEL Repository

P01130 (LDLR_HUMAN) Homo sapiens (Human)

Low-density lipoprotein receptor UniProtKB InterPro STRING Interactive Modelling

860 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4; Isoform 5; Isoform 6)

Available Structures

32 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
The structure of the LDLR/PCSK9 complex reveals the receptor in an extended conformation	3p5c SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q8NBP7;	276-715	4×CA;
Assess
The X-ray Crystal Structure of PCSK9 in Complex with the LDL receptor	3m0c SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q8NBP7;	276-713	3×CA;
Assess
The structure of the LDLR/PCSK9 complex reveals the receptor in an extended conformation	3p5b SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q8NBP7;	316-715	3×CA;
Assess
Structure of a Complex Between the Pair of the LDL Receptor Ligand-Binding Modules 3-4 and the Rece…	2fcw SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P30533;	107-184	4×NA; 5×MPD; 2×CA;
Assess
VSV G CR2	5oyl SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer B7UCZ5;	65-106	3×NAG; 2×CA; 7×GOL;
Assess
WT PCSK9-deltaC bound to EGF-A H306Y mutant of LDLR	2w2n SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q8NBP7;	314-354	3×CA;
Assess
WT PCSK9-DELTAC BOUND TO WT EGF-A OF LDLR	2w2m SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q8NBP7;	314-354	3×CA;
Assess
PCSK9-deltaC D374H mutant bound to WT EGF-A of LDLR	2w2q SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q8NBP7;	314-353	2×CA;
Assess
PCSK9:EGF-A complex	3bps SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q8NBP7;	314-353	1×CA;
Assess
PCSK9-deltaC D374A mutant bound to WT EGF-A of LDLR	2w2p SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q8NBP7;	314-353	1×CA;
Assess
PCSK9-deltaC D374Y mutant bound to WT EGF-A of LDLR	2w2o SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q8NBP7;	314-353	1×CA;
Assess
PCSK9:EGFA(H306Y)	3gcw SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q8NBP7;	314-353	1×CA;
Assess
PCSK9:EGFA (pH 7.4)	3gcx SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q8NBP7;	314-353	1×CA;
Assess
Structure of a complex between domain V of beta2-glycoprotein I and the fourth ligand-binding modul…	2kri SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02749;	147-184	1×CA;
Assess
VSV G CR3	5oy9 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0C2X0;	108-144	1×NAG; 1×NAG; 4×CA;
Assess
PCSK9 in complex with LDLR peptide	4ne9 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q8NBP7;	314-339	1×NAG; 1×CA;
Assess
Crystal structure of the LDL receptor tail in complex with autosomal recessive hypercholesterolemia…	3so6 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer D3ZAR1;	820-832
Assess
Extracellular domain of the LDL receptor	1n7d SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	65-714	1×NAG; 1×NAG; 8×CA; 3×KEG;
Assess
Crystal Structure of the LDL Receptor YWTD-EGF Domain Pair	1ijq SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	398-713
Assess
Solution structure of LA45 from LDLR	2lgp SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	144-235	2×CA;
Assess
NMR STRUCTURE OF A CONCATEMER OF THE FIRST AND SECOND LIGAND-BINDING MODULES OF THE HUMAN LDL RECEP…	1f5y SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	21-104	2×CA;
Assess
SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF A CONCATEMER OF EGF-HOMOLOGY MODULES OF THE HUMAN LOW D…	1hz8 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	314-395	2×CA;
Assess
SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF A CONCATEMER OF EGF-HOMOLOGY MODULES OF THE HUMAN LOW D…	1i0u SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	314-395	2×CA;
Assess
Solution structure of the LA7-EGFA pair from the LDL receptor	1xfe SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	272-353	2×CA;
Assess
NMR study of a pair of LDL receptor Ca2+ binding epidermal growth factor-like domains, 20 structures	1hj7 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	314-393	2×CA;
Assess
THREE-DIMENSIONAL STRUCTURE OF A CYSTEINE-RICH REPEAT FROM THE LOW-DENSITY LIPOPROTEIN RECEPTOR	1ldl SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	22-67
Assess
SECOND REPEAT OF THE LDL RECEPTOR LIGAND-BINDING DOMAIN	1ldr SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	64-104
Assess
LDL RECEPTOR LIGAND-BINDING MODULE 6	1d2j SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	233-272	1×CA;
Assess
NMR STRUCTURE OF THE SIXTH LIGAND-BINDING MODULE OF THE LDL RECEPTOR	1f8z SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	234-272	1×CA;
Assess
RXFP1 utilises hydrophobic moieties on a signalling surface of the LDLa module to mediate receptor …	2m7p SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	67-104	1×CA;
Assess
LDL RECEPTOR LIGAND-BINDING MODULE 5, CALCIUM-COORDINATING	1ajj SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	196-232	1×SO4; 1×CA;
Assess
Truncated EGF-A	2mg9 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	314-339	1×CA;
Assess

6 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
3m0c.1.C	monomer	0.74	276-713	3×CA;	100.00
Assess
8em7.1.A	monomer	0.60	27-826	1×NGA;	33.07
Assess
8em7.1.A	monomer	0.60	24-832		33.84
Assess
1n7d.1.A	monomer	0.59	65-714	8×CA; 2×KEG;	99.71
Assess
8em4.1.A	monomer	0.56	24-832	1×NGA; 1×CA;	33.84
Assess
8em4.1.A	monomer	0.54	27-826		33.07
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

25 SWISS-MODEL models built on isoform sequence

Template	Isoform	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	3m0c.1.C	monomer	0.78	149-535	3×CA;	92.44
Assess
Isoform 2	1f5y.1.A	monomer	0.60	23-104	2×CA;	100.00
Assess
Isoform 2	1n7d.1.A	monomer	0.58	26-555	4×CA; 1×KEG;	87.50
Assess
Isoform 3	3m0c.1.C	monomer	0.75	108-545	3×CA;	92.88
Assess
Isoform 3	8ffe.1.A	monomer	0.67	230-487		27.20
Assess
Isoform 3	1n7d.1.A	monomer	0.61	65-546	1×CA; 1×KEG;	93.54
Assess
Isoform 3	8em7.1.A	monomer	0.61	25-682		29.87
Assess
Isoform 3	8em4.1.A	monomer	0.61	66-682		29.87
Assess
Isoform 3	8em7.1.A	monomer	0.60	24-682		29.87
Assess
Isoform 3	8em4.1.A	monomer	0.58	24-682		29.87
Assess
Isoform 4	3m0c.1.C	monomer	0.75	235-672	3×CA;	99.87
Assess
Isoform 4	1n7d.1.A	monomer	0.59	24-673	7×CA; 1×KEG;	96.01
Assess
Isoform 5	3m0c.1.C	monomer	0.73	276-713	3×CA;	100.00
Assess
Isoform 5	1n7d.1.A	monomer	0.60	65-714	8×CA; 2×KEG;	99.71
Assess
Isoform 5	8em7.1.A	monomer	0.60	27-826	1×NGA;	33.07
Assess
Isoform 5	8em7.1.A	monomer	0.59	24-832		33.84
Assess
Isoform 5	8em4.1.A	monomer	0.56	24-832	1×NGA; 1×CA;	33.84
Assess
Isoform 5	8em4.1.A	monomer	0.54	27-826		33.07
Assess
Isoform 6	3m0c.1.C	monomer	0.77	155-592	3×CA;	99.38
Assess
Isoform 6	1n7d.1.A	monomer	0.63	27-593	6×CA; 1×KEG;	98.95
Assess
Isoform 6	8s9p.1.B	monomer	0.63	231-729		29.26
Assess
Isoform 6	8em4.1.A	monomer	0.62	113-729		30.42
Assess
Isoform 6	8em7.1.A	monomer	0.59	24-729		30.42
Assess
Isoform 6	8em7.1.A	monomer	0.59	25-729	1×CA;	31.56
Assess
Isoform 6	8em4.1.A	monomer	0.58	25-729		31.56
Assess

P01130 (LDLR_HUMAN) Homo sapiens (Human)

Low-density lipoprotein receptor UniProtKBInterProSTRINGInteractive Modelling

Available Structures

32 Experimental Structures

6 SWISS-MODEL models

25 SWISS-MODEL models built on isoform sequence

Alignments

Background

Resolution

Low-density lipoprotein receptor UniProtKB InterPro STRING Interactive Modelling