P0C6U8 | SWISS-MODEL Repository

P0C6U8 (R1A_SARS) Severe acute respiratory syndrome coronavirus (SARS-CoV)

Replicase polyprotein 1a UniProtKB InterPro Interactive Modelling

4382 aa; Sequence (Fasta) ; 14 identical sequences

It is possible new templates exist for this target since these models were created.

Available Structures

Host translation inhibitor nsp1 1-180; PRO_0000338255

	Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
	CryoEM structure of DNA Polymerase alpha - primase bound to SARS CoV nsp1	7opl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P09884; P49642; P49643; Q14181;	13-125	100.0	3×ZN; 1×SF4;
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Non-structural protein 2 181-818; PRO_0000338256

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
7fac.1.A	monomer	0.76	295-818	2×ZN;	100.00
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7msw.1.A	monomer	0.71	184-818	2×ZN;	68.34
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Papain-like protease nsp3 819-2740; PRO_0000338257

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal Structure of SARS-CoV papain-like protease C112S mutant in complex with ubiquitin	4m0w PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P62992;	1542-1858	99.69	1×ZN; 1×NA; 2×NHE; 3×GOL;
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Crystal structure of SARS-CoV macrodomain II in complex with human Paip1	6yxj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q9H074;	1207-1334	100
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Human SARS coronavirus unique domain	2w2g PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	1207-1470	99.61	2×SO4;
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Crystal structure of SARS coronavirus papain-like protease in complex with glycerol	5y3e PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1541-1854	100	1×ZN; 5×NA; 3×GOL;
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Crystal structure of SARS coronavirus papain-like protease conjugated with beta-mercaptoethanol	5y3q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1541-1854	100	1×ZN; 1×BME; 5×NA; 2×GOL;
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A new class of papain-like protease/deubiquitinase inhibitors blocks SARS virus replication	3e9s PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1541-1854	100	1×TTT; 1×ZN; 2×CL;
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X-Ray Structural and Biological Evaluation of a Series of Potent and Highly Selective Inhibitors of…	4ow0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1543-1854	100	1×ZN; 1×S88; 2×DMS; 1×GOL;
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Severe Acute Respiratory Syndrome-Coronavirus Papain-Like Protease Inhibitors: Design, Synthesis, P…	3mj5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1543-1854	100	1×GRM; 1×ZN;
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X-Ray Structural and Biological Evaluation of a Series of Potent and Highly Selective Inhibitors of…	4ovz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1548-1852	100	1×ZN; 1×P85; 1×DMS;
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SARS coronavirus-unique domain (SUD): Three-domain molecular architecture in solution and RNA bindi…	2kqv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1345-1469	100
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NMR STRUCTURE OF A PUTATIVE RNA BINDING PROTEIN (SARS1) FROM SARS CORONAVIRUS	2k87 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1884-1998	100
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SARS coronavirus-unique domain (SUD): Three-domain molecular architecture in solution and RNA bindi…	2kqw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1472-1538	100
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Solution structure of the SARS-unique domain-C from the nonstructural protein 3 (nsp3) of the sever…	2kaf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1473-1538	100
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Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
3e9s.1.A	monomer	0.76	1541-1854	1×TTT; 1×ZN;	100.00
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8ufl.1.A	monomer	0.73	1207-1469		100.00
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8yb5.1.B	monomer	0.70	2198-2558		76.50
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8yb5.1.Q	monomer	0.69	2206-2558		76.50
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Non-structural protein 4 2741-3240; PRO_0000338258

Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
8yb5.1.C	monomer	0.71	2771-3141	80.00
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8yb5.1.L	monomer	0.70	2771-3141	80.00
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3C-like proteinase nsp5 3241-3546; PRO_0000338259

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
SARS-CoV-1 3CLPro in complex with N-(4-(1H-imidazol-4-yl)phenyl)-2-(1H-benzo[d][1,2,3]triazol-1-yl)…	7lmg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3546	100	4×GOL; 2×Y6G; 2×PEG;
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X-ray Structure of SARS-CoV main protease covalently modified by compound GRL-0686	7rc1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3546	100	2×4IO; 10×DMS;
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SARS-CoV-1 3CLPro in complex with 2-(1H-benzo[d][1,2,3]triazol-1-yl)-N-(3-chlorobenzyl)-N-(4-(2-oxo…	7lmj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3546	100	4×PEG; 6×GOL; 2×Y67;
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SARS-CoV-1 3CLPro in complex with N-(4-(1H-pyrazol-4-yl)phenyl)-2-(1H-benzo[d][1,2,3]triazol-1-yl)-…	7lmi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3546	100	4×GOL; 2×Y6A;
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SARS-CoV-1 3CLPro in complex with 2-(1H-benzo[d][1,2,3]triazol-1-yl)-N-(4-(pyridin-3-yl)phenyl)-N-(…	7lmh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3546	100	2×Y6D; 4×GOL;
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Crystal structure of the complex resulting from the reaction between the SARS-CoV main protease and…	6y7m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3546	100	2×OEW; 2×DMS;
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Crystal structure of SARS-CoV 3C-like protease with M4Z	3vb7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3546	100	3×EDO; 1×GOL;
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Crystal structure of SARS-CoV 3C-like protease with C4Z	3vb5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3546	100	3×EDO;
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Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) 3CL Protease in Complex with N-[(1R)-2-(te…	3v3m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3546	100	2×0EN; 4×DMS;
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Crystal structure of SARS coronavirus main protease complexed with Cm-FF-H (soaking)	3sn8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3546	100	2×S89;
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Crystal structure of SARS-CoV 3C-like protease in apo form	3vb3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3546	100	1×PEG; 7×EDO;
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Crystal structure of SARS-CoV 3C-like protease with B4Z	3vb4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3546	100	8×EDO; 1×GOL;
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Structure of SARS 3CL protease with peptidic aldehyde inhibitor	3aw0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3546	99.67
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Crystal structure of SARS-CoV 3C-like protease with C6Z	3vb6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3546	100	1×EDO;
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Covalent complex of SARS-CoV main protease with 4-methoxy-N-[(2S)-4-methyl-1-oxo-1-({(2S)-3-oxo-1-[…	6xhn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3242-3544	100	2×V3D; 1×EDO;
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Discovery of N-(benzo[1,2,3]triazol-1-yl)-N-(benzyl)acetamido)phenyl) carboxamides as severe acute …	4mds PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3542	100	2×23H; 4×DMS;
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1.65 A resolution structure of SARS-CoV 3CL protease in complex with inhibitor 7j	6w2a PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3542	100	2×VDJ; 2×QYS;
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Structure of the SARS-CoV-1 main protease in complex with AG7404	7zqw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3542	100	2×XNV;
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Covalent complex of SARS-CoV main protease with N-[(2S)-1-({(2S,3S)-3,4-dihydroxy-1-[(3S)-2-oxopyrr…	6xhl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3242-3542	100	2×V2M;
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1.70 A resolution structure of SARS-CoV 3CL protease in complex with a deuterated GC376 alpha-ketoa…	7k0h PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3242-3542	100	2×CL; 2×VR4; 1×PG4;
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X-Ray Crystal Structure of the SARS Coronavirus Main Protease	1q2w PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3541	100.0	1×MPD;
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Structure of SARS 3CL protease auto-proteolysis resistant mutant in the absent of inhibitor	3aw1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3541	99.67
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Crystal structure of dimeric R298A mutant of SARS coronavirus main protease	4hi3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3541	99.67
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Covalent complex of SARS-CoV main protease with ethyl (4R)-4-({N-[(4-methoxy-1H-indol-2-yl)carbonyl…	6xho PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3242-3541	100	1×EDO; 2×V34;
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1.85 A resolution structure of SARS-CoV 3CL protease in complex with deuterated GC376	7k0g PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3540	100.0	2×K36; 2×B1S;
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Structure-Based Design, Synthesis, Evaluation of Peptide-mimetic SARS 3CL Protease Inhibitors	3atw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3540	99.67
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Crystal Structure of the F140A mutant of SARS-Coronovirus 3C-like Protease at pH 6.5	3f9g PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3242-3541	99.66
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Crystal Structure of the F140A mutant of SARS-Coronovirus 3C-like Protease at pH 7.6	3f9h PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3241-3540	99.67
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Crystal structure of SARS coronavirus main protease in complex with PF07304814	7wqi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3242-3540	100	2×80I;
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Crystal Structure of the F140A mutant of SARS-Coronovirus 3C-like Protease at pH 6.0	3f9f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3242-3540	99.67
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Mutation of Asn28 disrupts the enzymatic activity and dimerization of SARS 3CLpro	3fzd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3243-3541	99.66
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Crystal structure of SARS main protease in complex with Bofutrelvir	8y4e PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3242-3539	100	2×FHR;
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Crystal structure of SARS main protease in complex with inhibitor YH-53	7ygq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3242-3539	100	2×HUR;
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Crystal structure of SARS coronavirus main protease in complex with an inhibitor Shikonin	7eo8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	3242-3539	100	1×FNO;
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The co-crystal structure of Severe Acute Respiratory Syndrome Coronavirus 3C Like Protease with ald…	6lo0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	3241-3546	100	1×EOF;
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The co-crystal structure of Severe Acute Respiratory Syndrome Coronavirus 3C-Like Protease with ald…	6lny PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	3241-3546	100	1×EOC;
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Structure of SARS 3CL protease with peptidic aldehyde inhibitor containing cyclohexyl side chain	3avz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	3241-3540	99.67
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Crystal Structure of the S139A mutant of SARS-Coronovirus 3C-like Protease	3f9e PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	3243-3539	99.66
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NMR solution structure of C-terminal domain of SARS-CoV main protease in 2.5M urea	2liz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	3427-3546	100
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Non-structural protein 7 3837-3919; PRO_0000338261

Description	PDB ID	Oligo-state	Range	Seq id (%)
C-terminal domain of SARS-CoV nsp8 complex with nsp7	5f22 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P0C6X7;	3837-3915	100
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NMR Structure of the SARS Coronavirus Nonstructural Protein Nsp7 in Solution at pH 6.5	2kys PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	3837-3919	100
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Non-structural protein 8 3920-4117; PRO_0000338262

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
SARS-Coronavirus NSP12 bound to NSP7 and NSP8 co-factors	6nur PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P0C6X7;	3996-4111	100	2×ZN;
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SARS-Coronavirus NSP12 bound to NSP8 co-factor	6nus PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P0C6X7;	3999-4110	100	2×ZN;
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RNA-capping enzyme subunit nsp9 4118-4230; PRO_0000338263

	Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
	Crystal Structure of SARS-CoV nsp9 G104E	3ee7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	4121-4230	99.06	4×PO4; 7×GOL;
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Non-structural protein 10 4231-4369; PRO_0000338264

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal structure of nsp10/nsp16 complex of SARS coronavirus	3r24 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P0C6X7;	4240-4359	100	1×SAM; 2×ZN;
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Crystal structure of the SARS coronavirus nsp10 at 2.1A	2g9t PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-12-mer	4238-4359	100.0	24×ZN;
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The crystal structure of SARS nsp10 without zinc ion as additive	2ga6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-12-mer	4238-4359	100.0	24×ZN;
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Crystal structure of NSP10 from Sars coronavirus	2fyg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	4240-4362	100	2×ZN; 1×GOL;
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

P0C6U8 (R1A_SARS) Severe acute respiratory syndrome coronavirus (SARS-CoV)

Replicase polyprotein 1a UniProtKBInterProInteractive Modelling

Available Structures

Host translation inhibitor nsp1 1-180; PRO_0000338255

Non-structural protein 2 181-818; PRO_0000338256

Papain-like protease nsp3 819-2740; PRO_0000338257

Non-structural protein 4 2741-3240; PRO_0000338258

3C-like proteinase nsp5 3241-3546; PRO_0000338259

Non-structural protein 7 3837-3919; PRO_0000338261

Non-structural protein 8 3920-4117; PRO_0000338262

RNA-capping enzyme subunit nsp9 4118-4230; PRO_0000338263

Non-structural protein 10 4231-4369; PRO_0000338264

Alignments

Background

Resolution

Replicase polyprotein 1a UniProtKB InterPro Interactive Modelling