P18074 | SWISS-MODEL Repository

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P18074 (ERCC2_HUMAN) Homo sapiens (Human)

General transcription and DNA repair factor IIH helicase subunit XPD UniProtKB InterPro STRING Interactive Modelling

760 aa; Sequence (Fasta) ; (Isoform 2)

Available Structures

38 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Cryo-EM structure of the human TFIIH core complex	6nmi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P32780; P51948; Q13888; Q13889; Q6ZYL4; Q92759;	1-760	96.45	1×SF4; 6×ZN;
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Structure of the human Mediator-bound transcription pre-initiation complex	7lbm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0JLT2; O15514; O43513; O60244; O75448; O75586; P13984; P19387; P19388; P19447; P20226; P24928; P29083; P29084; P30876; P32780; P35269; P36954; P50613; P51946; P51948; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13503; Q13888; Q13889; Q15528; Q6P2C8; Q6ZYL4; Q71SY5; Q92759; Q96G25; Q96HR3; Q96RN5; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9NX70; Q9P086; Q9ULK4; Q9Y2X0; Q9Y3C7;	1-760	100	2×MG; 16×ZN; 1×SF4;
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RNA polymerase II pre-initiation complex with the proximal +1 nucleosome (PIC-Nuc10W)	8byq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P02281; P06897; P13984; P19447; P20226; P29083; P29084; P32780; P35269; P50613; P51946; P51948; P52655; P52657; P60899; P62799; P84233; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	1-760	100	1×SF4; 16×ZN; 1×MG;
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Initial DNA-lesion (Cy5) binding by XPC and TFIIH	8ebs PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P32780; P41208; P54727; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;	1-760	100	1×SF4; 5×ZN; 2×CA;
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Initial DNA-lesion (AP) binding by XPC and TFIIH complex 1	8ebv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P32780; P41208; P54727; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;	1-760	100	1×SF4; 5×ZN; 2×CA;
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Initial DNA-lesion (AP) binding by XPC and TFIIH complex2	8ebw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P32780; P41208; P54727; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;	1-760	100	1×SF4; 5×ZN; 2×CA;
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p53-bound TFIID-based holo PIC on HDM2 promoter	7egc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P24928; P29083; P29084; P32780; P35269; P49848; P50613; P51946; P51948; P52655; P52657; P60899; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-734	100	16×ZN; 1×SF4; 1×MG;
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Human holo-PIC in the closed state	6o9l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O15514; P13984; P19387; P19388; P19447; P20226; P23193; P24928; P29083; P29084; P30876; P32780; P35269; P36954; P50613; P51946; P51948; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	11-742	100	2×MG; 17×ZN; 1×SF4;
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Structure of the human apo TFIIH	6o9m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P32780; P51948; Q13888; Q13889; Q6ZYL4; Q92759;	11-742	100	1×SF4; 6×ZN;
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XPA repositioning Core7 of TFIIH relative to XPC-DNA lesion (Cy5)	8ebt PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P23025; P32780; P41208; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;	1-730	100.0	1×SF4; 6×ZN; 2×CA;
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XPC release from Core7-XPA-DNA (Cy5)	8ebu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P23025; P32780; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;	1-730	100.0	1×SF4; 6×ZN;
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XPA repositioning Core7 of TFIIH relative to XPC-DNA lesion (AP)	8ebx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P23025; P32780; P41208; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;	1-730	100.0	1×SF4; 6×ZN; 2×CA;
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XPC release from Core7-XPA-DNA (AP)	8eby PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P23025; P32780; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;	1-730	100.0	1×SF4; 6×ZN;
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Structure of transcribing complex 2 (TC2), the initially transcribing complex with Pol II positione…	8wak PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-728	100.0	17×ZN; 1×SF4; 1×W0F; 1×MG;
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Structure of transcribing complex 3 (TC3), the initially transcribing complex with Pol II positione…	8wal PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-728	100.0	17×ZN; 1×SF4; 1×W0F; 1×MG;
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Structure of transcribing complex 4 (TC4), the initially transcribing complex with Pol II positione…	8wan PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-728	100.0	17×ZN; 1×SF4; 1×MG; 1×W0F;
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Structure of transcribing complex 5 (TC5), the initially transcribing complex with Pol II positione…	8wao PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-728	100.0	17×ZN; 1×SF4; 1×MG; 1×W0F;
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Structure of transcribing complex 6 (TC6), the initially transcribing complex with Pol II positione…	8wap PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-728	100.0	17×ZN; 1×SF4; 1×MG; 1×W0F;
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Structure of transcribing complex 7 (TC7), the initially transcribing complex with Pol II positione…	8waq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-728	100.0	17×ZN; 1×SF4; 1×MG; 1×W0F;
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Structure of transcribing complex 8 (TC8), the initially transcribing complex with Pol II positione…	8war PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-728	100.0	17×ZN; 1×SF4; 1×MG; 1×W0F;
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Human Mediator with RNA Polymerase II Pre-initiation complex	7nvr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; A0JLT2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O43513; O60244; O75586; P13984; P19447; P20226; P29083; P29084; P32780; P35269; P50613; P51946; P51948; P52655; P52657; P60899; Q00403; Q13503; Q13888; Q13889; Q15528; Q6P2C8; Q6ZYL4; Q92759; Q96G25; Q96HR3; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9P086; Q9Y3C7;	1-728	100.0	1×SF4; 18×ZN; 1×MG;
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Structure of transcribing complex 9 (TC9), the initially transcribing complex with Pol II positione…	8was PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-728	100.0	17×ZN; 1×SF4; 1×MG; 1×W0F;
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TFIIH in a pre-translocated state (without ADP-BeF3)	7nvw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P29083; P32780; P51948; Q13888; Q13889; Q6ZYL4; Q92759;	1-728	100.0	1×SF4; 7×ZN;
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RNA polymerase II pre-initiation complex with the distal +1 nucleosome (PIC-Nuc18W)	8bvw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P02281; P06897; P13984; P19447; P20226; P29083; P29084; P32780; P35269; P50613; P51946; P51948; P52655; P52657; P60899; P62799; P84233; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	1-728	100.0	1×SF4; 17×ZN; 1×MG;
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TFIIH in a post-translocated state (with ADP-BeF3)	7nvx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P29083; P32780; P51948; Q13888; Q13889; Q6ZYL4; Q92759;	1-728	100.0	1×SF4; 7×ZN; 1×ADP; 1×MG; 1×BEF;
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RNA polymerase II pre-initiation complex with closed promoter DNA in proximal position	7nvy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P19447; P20226; P29083; P29084; P32780; P35269; P51948; P52655; P52657; P60899; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	1-728	100.0	1×SF4; 17×ZN; 1×MG;
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RNA polymerase II pre-initiation complex with closed promoter DNA in distal position	7nvz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P19447; P20226; P29083; P29084; P32780; P35269; P51948; P52655; P52657; P60899; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	1-728	100.0	1×SF4; 17×ZN; 1×MG;
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RNA polymerase II pre-initiation complex with open promoter DNA	7nw0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P19447; P20226; P29083; P29084; P32780; P35269; P51948; P52655; P52657; P60899; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	1-728	100.0	1×SF4; 15×ZN; 1×ADP; 2×MG; 1×BEF;
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Structure of the core TFIIH-XPA-DNA complex	6ro4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P23025; Q13888; Q13889; Q6ZYL4; Q92759;	1-728	100.0	1×SF4; 6×ZN;
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Core TFIIH-XPA-DNA complex with modelled p62 subunit	7ad8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P23025; P32780; Q13888; Q13889; Q6ZYL4; Q92759;	1-728	100.0	1×SF4; 6×ZN;
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TFIID-based holo PIC on SCP promoter	7egb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P24928; P29083; P29084; P32780; P35269; P49848; P50613; P51946; P51948; P52655; P52657; P60899; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-728	100.0	17×ZN; 1×SF4; 1×MG;
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The cryo-EM structure of human TFIIH	5of4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; Q13888; Q13889; Q6ZYL4; Q92759;	11-734	100	1×SF4;
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Human core TFIIH bound to DNA within the PIC	5ivw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; Q13888; Q13889; Q6ZYL4; Q92759;	15-726	100.0
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Human holo-PIC in the closed state	5iy6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O15514; P13984; P19387; P19388; P19447; P20226; P23193; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	15-726	100.0	2×MG; 11×ZN;
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Human holo-PIC in the open state	5iy7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O15514; P13984; P19387; P19388; P19447; P20226; P23193; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	15-726	100.0	2×MG; 11×ZN;
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Human holo-PIC in the initial transcribing state	5iy8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O15514; P13984; P19387; P19388; P19447; P20226; P23193; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	15-726	100.0	2×MG; 11×ZN;
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Human holo-PIC in the initial transcribing state (no IIS)	5iy9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O15514; P13984; P19387; P19388; P19447; P20226; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	15-726	100.0	2×MG; 10×ZN;
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Helicase domain complex	6tun PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P51948;	246-439	100.0	1×CL;
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2 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
8ebs.1.B	monomer	0.78	1-760	1×SF4;	100.00
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5ivw.1.B	monomer	0.55	15-726		100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

4 SWISS-MODEL models built on isoform sequence

Isoform	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	8ebs.1.B	monomer	0.77	1-399	1×SF4;	97.49
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Isoform 2	8ebs.1.B	monomer	0.77	1-399	1×SF4;	97.49
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Isoform 2	5ivw.1.B	monomer	0.52	1-399		97.49
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Isoform 2	5ivw.1.B	monomer	0.52	1-399		97.49
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P18074 (ERCC2_HUMAN) Homo sapiens (Human)

General transcription and DNA repair factor IIH helicase subunit XPD UniProtKBInterProSTRINGInteractive Modelling

Available Structures

38 Experimental Structures

2 SWISS-MODEL models

4 SWISS-MODEL models built on isoform sequence

Alignments

Background

Resolution

General transcription and DNA repair factor IIH helicase subunit XPD UniProtKB InterPro STRING Interactive Modelling