P18074 | SWISS-MODEL Repository

P18074 (ERCC2_HUMAN) Homo sapiens (Human)

General transcription and DNA repair factor IIH helicase subunit XPD UniProtKB InterPro STRING Interactive Modelling

It is possible new templates exist for this target since these models were created.

Available Structures

38 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Initial DNA-lesion (Cy5) binding by XPC and TFIIH	8ebs PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P32780; P41208; P54727; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;	1-760	100	1×SF4; 5×ZN; 2×CA;
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Initial DNA-lesion (AP) binding by XPC and TFIIH complex2	8ebw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P32780; P41208; P54727; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;	1-760	100	1×SF4; 5×ZN; 2×CA;
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Cryo-EM structure of the human TFIIH core complex	6nmi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P32780; P51948; Q13888; Q13889; Q6ZYL4; Q92759;	1-760	96.45	1×SF4; 6×ZN;
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RNA polymerase II pre-initiation complex with the proximal +1 nucleosome (PIC-Nuc10W)	8byq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P02281; P06897; P13984; P19447; P20226; P29083; P29084; P32780; P35269; P50613; P51946; P51948; P52655; P52657; P60899; P62799; P84233; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	1-760	100	1×SF4; 16×ZN; 1×MG;
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Structure of the human Mediator-bound transcription pre-initiation complex	7lbm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0JLT2; O15514; O43513; O60244; O75448; O75586; P13984; P19387; P19388; P19447; P20226; P24928; P29083; P29084; P30876; P32780; P35269; P36954; P50613; P51946; P51948; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13503; Q13888; Q13889; Q15528; Q6P2C8; Q6ZYL4; Q71SY5; Q92759; Q96G25; Q96HR3; Q96RN5; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9NX70; Q9P086; Q9ULK4; Q9Y2X0; Q9Y3C7;	1-760	100	2×MG; 16×ZN; 1×SF4;
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Initial DNA-lesion (AP) binding by XPC and TFIIH complex 1	8ebv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P32780; P41208; P54727; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;	1-760	100	1×SF4; 5×ZN; 2×CA;
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p53-bound TFIID-based holo PIC on HDM2 promoter	7egc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P24928; P29083; P29084; P32780; P35269; P49848; P50613; P51946; P51948; P52655; P52657; P60899; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-734	100	16×ZN; 1×SF4; 1×MG;
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Structure of the human apo TFIIH	6o9m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P32780; P51948; Q13888; Q13889; Q6ZYL4; Q92759;	11-742	100	1×SF4; 6×ZN;
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Human holo-PIC in the closed state	6o9l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O15514; P13984; P19387; P19388; P19447; P20226; P23193; P24928; P29083; P29084; P30876; P32780; P35269; P36954; P50613; P51946; P51948; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	11-742	100	2×MG; 17×ZN; 1×SF4;
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XPC release from Core7-XPA-DNA (Cy5)	8ebu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P23025; P32780; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;	1-730	100.0	1×SF4; 6×ZN;
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XPC release from Core7-XPA-DNA (AP)	8eby PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P23025; P32780; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;	1-730	100.0	1×SF4; 6×ZN;
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XPA repositioning Core7 of TFIIH relative to XPC-DNA lesion (AP)	8ebx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P23025; P32780; P41208; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;	1-730	100.0	1×SF4; 6×ZN; 2×CA;
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XPA repositioning Core7 of TFIIH relative to XPC-DNA lesion (Cy5)	8ebt PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P23025; P32780; P41208; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;	1-730	100.0	1×SF4; 6×ZN; 2×CA;
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Structure of transcribing complex 9 (TC9), the initially transcribing complex with Pol II positione…	8was PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-728	100.0	17×ZN; 1×SF4; 1×MG; 1×W0F;
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Structure of transcribing complex 5 (TC5), the initially transcribing complex with Pol II positione…	8wao PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-728	100.0	17×ZN; 1×SF4; 1×MG; 1×W0F;
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Structure of transcribing complex 8 (TC8), the initially transcribing complex with Pol II positione…	8war PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-728	100.0	17×ZN; 1×SF4; 1×MG; 1×W0F;
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Structure of transcribing complex 6 (TC6), the initially transcribing complex with Pol II positione…	8wap PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-728	100.0	17×ZN; 1×SF4; 1×MG; 1×W0F;
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Structure of the core TFIIH-XPA-DNA complex	6ro4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P23025; Q13888; Q13889; Q6ZYL4; Q92759;	1-728	100.0	1×SF4; 6×ZN;
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Core TFIIH-XPA-DNA complex with modelled p62 subunit	7ad8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P23025; P32780; Q13888; Q13889; Q6ZYL4; Q92759;	1-728	100.0	1×SF4; 6×ZN;
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Structure of transcribing complex 3 (TC3), the initially transcribing complex with Pol II positione…	8wal PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-728	100.0	17×ZN; 1×SF4; 1×W0F; 1×MG;
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Structure of transcribing complex 4 (TC4), the initially transcribing complex with Pol II positione…	8wan PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-728	100.0	17×ZN; 1×SF4; 1×MG; 1×W0F;
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Structure of transcribing complex 2 (TC2), the initially transcribing complex with Pol II positione…	8wak PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-728	100.0	17×ZN; 1×SF4; 1×W0F; 1×MG;
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Structure of transcribing complex 7 (TC7), the initially transcribing complex with Pol II positione…	8waq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-728	100.0	17×ZN; 1×SF4; 1×MG; 1×W0F;
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TFIID-based holo PIC on SCP promoter	7egb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P19447; P20226; P21675; P24928; P29083; P29084; P32780; P35269; P49848; P50613; P51946; P51948; P52655; P52657; P60899; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-728	100.0	17×ZN; 1×SF4; 1×MG;
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RNA polymerase II pre-initiation complex with the distal +1 nucleosome (PIC-Nuc18W)	8bvw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P02281; P06897; P13984; P19447; P20226; P29083; P29084; P32780; P35269; P50613; P51946; P51948; P52655; P52657; P60899; P62799; P84233; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	1-728	100.0	1×SF4; 17×ZN; 1×MG;
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TFIIH in a pre-translocated state (without ADP-BeF3)	7nvw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P29083; P32780; P51948; Q13888; Q13889; Q6ZYL4; Q92759;	1-728	100.0	1×SF4; 7×ZN;
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TFIIH in a post-translocated state (with ADP-BeF3)	7nvx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; P29083; P32780; P51948; Q13888; Q13889; Q6ZYL4; Q92759;	1-728	100.0	1×SF4; 7×ZN; 1×ADP; 1×MG; 1×BEF;
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RNA polymerase II pre-initiation complex with closed promoter DNA in proximal position	7nvy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P19447; P20226; P29083; P29084; P32780; P35269; P51948; P52655; P52657; P60899; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	1-728	100.0	1×SF4; 17×ZN; 1×MG;
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Human Mediator with RNA Polymerase II Pre-initiation complex	7nvr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; A0JLT2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O43513; O60244; O75586; P13984; P19447; P20226; P29083; P29084; P32780; P35269; P50613; P51946; P51948; P52655; P52657; P60899; Q00403; Q13503; Q13888; Q13889; Q15528; Q6P2C8; Q6ZYL4; Q92759; Q96G25; Q96HR3; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9P086; Q9Y3C7;	1-728	100.0	1×SF4; 18×ZN; 1×MG;
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RNA polymerase II pre-initiation complex with open promoter DNA	7nw0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P19447; P20226; P29083; P29084; P32780; P35269; P51948; P52655; P52657; P60899; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	1-728	100.0	1×SF4; 15×ZN; 1×ADP; 2×MG; 1×BEF;
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RNA polymerase II pre-initiation complex with closed promoter DNA in distal position	7nvz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P19447; P20226; P29083; P29084; P32780; P35269; P51948; P52655; P52657; P60899; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	1-728	100.0	1×SF4; 17×ZN; 1×MG;
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The cryo-EM structure of human TFIIH	5of4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; Q13888; Q13889; Q6ZYL4; Q92759;	11-734	100	1×SF4;
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Human holo-PIC in the initial transcribing state	5iy8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O15514; P13984; P19387; P19388; P19447; P20226; P23193; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	15-726	100.0	2×MG; 11×ZN;
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Human holo-PIC in the initial transcribing state (no IIS)	5iy9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O15514; P13984; P19387; P19388; P19447; P20226; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	15-726	100.0	2×MG; 10×ZN;
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Human holo-PIC in the closed state	5iy6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O15514; P13984; P19387; P19388; P19447; P20226; P23193; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	15-726	100.0	2×MG; 11×ZN;
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Human holo-PIC in the open state	5iy7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O15514; P13984; P19387; P19388; P19447; P20226; P23193; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	15-726	100.0	2×MG; 11×ZN;
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Human core TFIIH bound to DNA within the PIC	5ivw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P19447; Q13888; Q13889; Q6ZYL4; Q92759;	15-726	100.0
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Helicase domain complex	6tun PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P51948;	246-439	100.0	1×CL;
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2 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
8ebs.1.B	monomer	0.78	1-760	1×SF4;	100.00
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5ivw.1.B	monomer	0.55	15-726		100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

2 SWISS-MODEL models built on isoform sequence

Isoform	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	6nmi.1.B	monomer	0.75	1-399	1×SF4;	90.73
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Isoform 2	5ivw.1.B	monomer	0.53	1-399		97.49
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P18074 (ERCC2_HUMAN) Homo sapiens (Human)

General transcription and DNA repair factor IIH helicase subunit XPD UniProtKBInterProSTRINGInteractive Modelling

Available Structures

38 Experimental Structures

2 SWISS-MODEL models

2 SWISS-MODEL models built on isoform sequence

Alignments

Background

Resolution

General transcription and DNA repair factor IIH helicase subunit XPD UniProtKB InterPro STRING Interactive Modelling