SMTL ID : 6o9m.1

Structure of the human apo TFIIH

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-mer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 10 residues within 4Å: Chain A: L.115, C.116, H.118, C.134, T.138, C.155, F.157, C.190, F.193, R.299 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.116, A:C.134, A:C.155, A:C.190

6 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain D: C.6, C.9, T.12, C.31, C.34 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.6, D:C.31, D:C.34 ZN.3: 2 residues within 4Å: Chain D: C.26, T.51 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:C.26 ZN.4: 6 residues within 4Å: Chain B: Q.355 Chain E: C.268, S.269, C.271, S.273, T.284 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:S.269, E:C.271, E:S.273 ZN.5: 5 residues within 4Å: Chain G: C.345, C.348, F.367, C.368, C.371 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:C.345, G:C.368, G:C.371 ZN.6: 5 residues within 4Å: Chain G: C.360, C.363, C.382, G.384, C.385 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:C.363, G:C.382, G:C.385 ZN.7: 4 residues within 4Å: Chain B: R.473 Chain G: Q.293, C.294, C.308 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:Q.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, C. et al., Transcription preinitiation complex structure and dynamics provide insight into genetic diseases. Nat.Struct.Mol.Biol. (2019)

Release Date

2019-05-29

Peptides

TFIIH basal transcription factor complex helicase XPD subunit: A
General transcription factor IIH subunit 1: B
General transcription factor IIH subunit 4, p52: C
CDK-activating kinase assembly factor MAT1: D
General transcription factor IIH subunit 3: E
General transcription factor IIH subunit 5: F
General transcription factor IIH subunit 2: G
TFIIH basal transcription factor complex helicase XPB subunit: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
0

B
1

C
2

D
3

E
4

F
5

G
6

H
7

TFIIH basal transcription factor complex helicase XPD subunit

General transcription factor IIH subunit 1

General transcription factor IIH subunit 4, p52

CDK-activating kinase assembly factor MAT1

General transcription factor IIH subunit 3

General transcription factor IIH subunit 5

General transcription factor IIH subunit 2

TFIIH basal transcription factor complex helicase XPB subunit

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