SMTL ID : 6ro4.1

Structure of the core TFIIH-XPA-DNA complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 11 residues within 4Å: Chain E: L.115, C.116, I.117, H.118, V.121, C.134, T.138, C.155, F.157, C.190, Y.192 0 PLIP interactions:

6 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain F: C.268, V.270, C.271, C.282, T.284, C.285 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.268, F:C.271, F:C.282, F:C.285 ZN.3: 4 residues within 4Å: Chain F: C.255, C.257, H.258, C.276 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.255, F:C.257, F:H.258, F:C.276 ZN.4: 4 residues within 4Å: Chain G: C.291, C.294, C.305, C.308 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.291, G:C.294, G:C.305, G:C.308 ZN.5: 4 residues within 4Å: Chain G: C.345, C.348, C.368, C.371 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.345, G:C.348, G:C.368, G:C.371 ZN.6: 4 residues within 4Å: Chain G: C.360, C.363, C.382, C.385 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.360, G:C.363, G:C.382, G:C.385 ZN.7: 6 residues within 4Å: Chain I: C.105, E.107, C.108, T.125, C.126, C.129 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.105, I:C.108, I:C.126, I:C.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kokic, G. et al., Structural basis of TFIIH activation for nucleotide excision repair. Nat Commun (2019)

Release Date

2019-07-03

Peptides

General transcription and DNA repair factor IIH helicase subunit XPB: C
General transcription factor IIH subunit 5: D
TFIIH basal transcription factor complex helicase XPD subunit: E
General transcription factor IIH subunit 3: F
General transcription factor IIH subunit 2: G
General transcription factor IIH subunit 4: H
DNA repair protein complementing XP-A cells: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
F

E
B

F
E

G
D

H
C

I
G

General transcription and DNA repair factor IIH helicase subunit XPB

General transcription factor IIH subunit 5

TFIIH basal transcription factor complex helicase XPD subunit

General transcription factor IIH subunit 3

General transcription factor IIH subunit 2

General transcription factor IIH subunit 4

DNA repair protein complementing XP-A cells

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