P34087 | SWISS-MODEL Repository

P34087 (RPB7_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

DNA-directed RNA polymerase II subunit RPB7 UniProtKB InterPro STRING Interactive Modelling

171 aa; Sequence (Fasta) ; 10 identical sequences: Saccharomyces cerevisiae: G2WBE2, C8Z5W7, C7GSC0, A6ZZ03, B3LFP8; Saccharomyces pastorianus: A0A6C1DRT7; Saccharomyces paradoxus: A0A8B8UPB7; Saccharomyces uvarum: A0AA35NMT8; Saccharomyces mikatae IFO 1815: A0AA35IWK8; Saccharomyces cerevisiae x Saccharomyces kudriavzevii: H0GEL4

It is possible new templates exist for this target since these models were created.

Available Structures

117 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal structure of yeast subcomplex of Rpb4 and Rpb7	1y14 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P20433;	1-171	100.0
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STRUCTURAL BASIS OF TRANSCRIPTION: RNA POLYMERASE II SUBSTRATE BINDING AND METAL COORDINATION AT 3.…	8u9x PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P20435;	1-171		8×ZN; 3×MN; 1×ATP; 1×GOL;
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elongating RNA Polymerase II-Bye1 TLD complex	4by7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P36106; P38902; P40422;	1-171	100	8×ZN; 1×MG; 2×EPE;
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RNA polymerase II elongation complex in the presence of 3d-Napht-A	5ot2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG; 1×AHW;
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Complete RNA polymerase II elongation complex I with a T-U mismatch	3hou PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN;
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Arrested RNA polymerase II-Bye1 complex	4bxx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P36106; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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Arrested RNA Polymerase II reactivation intermediate	3po3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	9×ZN; 1×MG; 2×ACT; 1×EPE; 1×PGE;
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Arrested RNA Polymerase II elongation complex	3po2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG; 1×ACT; 1×EPE; 1×PEG;
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STRUCTURAL BASIS OF TRANSCRIPTION: RNA POLYMERASE II SUBSTRATE BINDING AND METAL COORDINATION USING…	8u9r PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P20435;	1-171		8×ZN; 1×GOL; 3×MG; 1×ATP;
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RNA Polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid and soaked with AMPCPP	4a3e PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG; 1×APC;
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Structure of RNA polymerase II-TFIIB complex	4bbr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P38902; P40422;	1-171	100	9×ZN; 2×MG;
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Complete RNA polymerase II elongation complex VI	3hoy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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Alpha-amanitin inhibited complete RNA polymerase II elongation complex	2vum PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; P85421;	1-171	100	8×ZN; 1×MG;
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RNA Polymerase II elongation complex containing a CPD Lesion	4a93 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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RNA Polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid	4a3d PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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RNA Pol II - High Mn(+2) concentration	9bvt PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 2×MN; 1×GOL;
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RNA Polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid	4a3b PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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Complete RNA polymerase II elongation complex II	3hov PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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RNA Polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid and soaked with AMPCPP	4a3f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	1×APC; 8×ZN; 1×MG;
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RNA Polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid and soaked with AMPCPP	4a3l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG; 1×APC;
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RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid	4a3g PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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RNA Polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid	4a3k PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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RNA Polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid	4a3c PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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RNA Polymerase II - No ATP	9bw0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN;
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Structure of RNA Polymerase II-Tfg1 peptide complex	5ip7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; P41895;	1-171	100	8×ZN; 1×MG;
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Structure of an initially transcribing RNA polymerase II-TFIIB complex	4bbs PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P38902; P40422;	1-171	100	9×ZN; 2×MG;
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elongating RNA Polymerase II-Bye1 TLD complex soaked with AMPCPP	4by1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P36106; P38902; P40422;	1-171	100	8×ZN; 1×MG; 1×APC;
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Complete RNA polymerase II elongation complex III with a T-U mismatch and a frayed RNA 3'-uridine	3how PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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Complete RNA polymerase II elongation complex V	3hox PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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Complete RNA polymerase II elongation complex IV with a T-U mismatch and a frayed RNA 3'-guanine	3hoz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubb…	5c3e PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	9×ZN; 2×MG;
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RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid and soaked with GMPCPP	4a3j PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG; 1×G2P;
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8-oxoguanine containing RNA polymerase II elongation complex D	3i4m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	1×MG; 8×ZN;
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Cisplatin lesion containing RNA polymerase II elongation complex	2r7z PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	1×CPT; 8×ZN; 1×MG;
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Elongation complex of RNA polymerase II with artificial RdRP scaffold	2r92 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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CPD lesion containing RNA Polymerase II elongation complex C	2ja7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	1×MG; 8×ZN;
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CPD lesion containing RNA Polymerase II elongation complex D	2ja8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	1×MG; 8×ZN;
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CPD lesion containing RNA Polymerase II elongation complex A	2ja5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	1×MG; 8×ZN;
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Refined RNA Polymerase II-TFIIS complex	1y1v PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	9×ZN; 1×MG;
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Complete 12-Subunit RNA Polymerase II at 3.8 Angstrom	1wcm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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RNA Polymerase II binary complex with DNA	4a3i PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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Complete RNA Polymerase II-RNA inhibitor complex	2b63 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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12 Subunit RNA Polymerase II at Room Temperature collected using SFX	5u5q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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12-Subunit RNA Polymerase II Refined with Zn-SAD data	3fki PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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Structure of RNA Polymerase II-TFIIF complex	5ip9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; P41895;	1-171	100	8×ZN; 1×MG;
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8-oxoguanine containing RNA polymerase II elongation complex E	3i4n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	1×MG; 8×ZN;
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RNA Polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid and soaked with AMPCPP	4a3m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	1×APC; 8×ZN; 1×MG;
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Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubb…	5c44 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100
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Elongation complex of RNA polymerase II with a hepatitis delta virus-derived RNA stem loop	2r93 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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Yeast RNAP II containing poly(A)-signal sequence in the active site	3h3v PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubb…	5c4x PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	9×ZN; 2×MG;
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CPD lesion containing RNA Polymerase II elongation complex B	2ja6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	1×MG; 8×ZN;
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Complete RNA Polymerase II elongation complex	1y1w PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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RNA Polymerase II-TFIIS-DNA/RNA complex	1y1y PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100
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12-subunit RNA Polymerase II	2b8k PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN;
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Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubb…	5c4a PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100.0	8×ZN; 2×MG;
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Crystal structure of RNA Polymerase II in complex with TFIIB	3k1f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P38902; P40422;	1-171	100	9×ZN;
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RNA polymerase II variant containing A Chimeric RPB9-C11 subunit	3qt1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	7×ZN; 1×MG;
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Complete RNA Polymerase II elongation complex with substrate analogue GMPCPP	1y77 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG; 1×G2P;
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RNA Polymerase II-Bye1 complex	4bxz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P36106; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleoso…	8ceo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12321; Q12343; Q3E7C1; Q99278;	1-171	100	1×SF4; 17×ZN; 1×MG;
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Mediator-PIC Early (Core B)	7uif PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P33308; P34162; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q06213; Q08278; Q12321; Q12343; Q99278;	1-171	100
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RNA polymerase II pre-initiation complex (PIC1)	7ml0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-171	100	17×ZN; 1×MG; 1×SF4;
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RNA pol II elongation complex	5vvs PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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RNA polymerase II-Spt4/5-nucleosome-Chd1 structure	7nkx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06897; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P32657; P32914; P38902; P40422; P62799; P84233;	1-171	100	8×ZN; 1×MG; 1×ADP; 1×BEF;
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RNA Polymerase II-Spt4/5-nucleosome-FACT structure	7nky PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06897; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P32558; P32914; P38902; P40422; P62799; P84233; Q04636;	1-171	100	9×ZN; 1×MG;
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Structure of transcribing RNA polymerase II-nucleosome complex	6i84 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06897; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; P62799; P84233;	1-171	100	8×ZN; 1×MG;
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Structure of EC+EC (leading EC-focused)	7mka PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 2×MG;
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Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (comple…	7zsa PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-171	100	17×ZN; 1×MG; 1×SF4;
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Structure of a yeast closed complex (core CC1)	6gyk PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P38902; P40422; P41895; P41896;	1-171	100	9×ZN; 1×MG;
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Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module	3j1n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100
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Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA	7o75 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-171	100	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Cryo-EM structure of backtracked Pol II	8tvv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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RNA polymerase II pre-initiation complex (PIC3)	7ml2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-171	100	17×ZN; 1×MG; 1×SF4;
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Cryo-EM structure of CPD-stalled Pol II (Conformation 2)	8tvx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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Cryo-EM structure of CPD lesion containing RNA Polymerase II elongation complex with Rad26 and Elf1…	8tvy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P36053; P38902; P40352; P40422;	1-171	100	8×ZN; 1×MG;
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Yeast RNA polymerase II transcription pre-initiation complex (consensus)	7o4j PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-171	100	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Yeast TFIIH in the expanded state within the pre-initiation complex	7o4l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P20433; P20435; P32776; P36100; P36145; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-171	100	1×SF4; 11×ZN; 1×BEF; 1×MG; 1×ADP;
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Structure of a yeast closed complex with distorted DNA (core CCdist)	6gyl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P36100; P36145; P38902; P40422; P41895; P41896;	1-171	100	10×ZN; 1×MG;
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Cryo-EM structure of yeast Rat1-bound Pol II pre-termination transcription complex 2 (Pol II Rat1-P…	8k5p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P38902; P40422; P53063; Q02792;	1-171	100	8×ZN; 3×MG;
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RNA polymerase II pre-initiation complex (PIC2)	7ml1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-171	100	19×ZN; 1×SF4; 1×MG;
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Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome (complex A)	7zs9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-171	100	17×ZN; 1×MG; 1×SF4;
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Ternary complex of RNA Pol II, transcription scaffold and Rad26	5vvr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40352; P40422;	1-171	100	8×ZN; 1×MG;
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Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA	7o72 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-171	100	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble	7o4i PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-171	100	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Yeast TFIIH in the contracted state within the pre-initiation complex	7o4k PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P20433; P20435; P32776; P36100; P36145; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-171	100	1×SF4; 10×ZN; 1×BEF; 1×MG; 1×ADP;
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RNA polymerase II initially transcribing complex (ITC)	7ml4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-171	100	15×ZN; 1×MG; 1×SF4;
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Yeast RNA polymerase II transcription pre-initiation complex with closed distorted promoter DNA	7o73 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-171	100	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Mediator-RNA Polymerase II Pre-Initiation Complex	5sva PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P33308; P34162; P35189; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q08278; Q12343; Q3E7C1; Q99278;	1-171	100	8×ZN; 1×MG;
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Core Mediator-PICearly (Copy A)	7ui9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P33308; P34162; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q06213; Q08278; Q12321; Q12343; Q99278;	1-171	100
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Complex structure of trailing EC of EC+EC (trailing EC-focused)	7mk9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; P41895; P41896;	1-171	100	8×ZN; 2×MG;
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Cryo-EM structure of yeast Rat1-bound Pol II pre-termination transcription complex 1 (Pol II Rat1-P…	8jch PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P38902; P40422; P53063; Q02792;	1-171	100	8×ZN; 3×MG;
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Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP, comple…	7zsb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-171	100	17×ZN; 1×MG; 1×SF4;
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Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (engaged state)	8tug PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH AND CORE MEDIATOR	5oqm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12343; Q3E7C1; Q99278;	1-171	100	16×ZN; 1×MG; 1×SF4;
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STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH	5oqj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-171	100	16×ZN; 1×MG; 1×SF4;
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Structure of a yeast closed complex with distorted DNA (CCdist)	6gym PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	1-171	100	1×SF4; 16×ZN; 1×MG;
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Orientation of RNA polymerase II within the human VP16-Mediator-pol II-TFIIF assembly	3j0k PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902;	1-171	100	1×MG; 9×ZN;
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Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (open state)	8tvp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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Yeast RNA polymerase II transcription pre-initiation complex with core Mediator	8cen PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12321; Q12343; Q3E7C1; Q99278;	1-171	100	1×SF4; 17×ZN; 1×MG;
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Cryo-EM structure of CPD-stalled Pol II (conformation 1)	8tvw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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Composite map of PIC_delta_TFIIK form2	8uoq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q04673; Q12004; Q3E7C1;	1-171	100	15×ZN; 2×MG; 1×SF4;
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Cryo-EM structure of backtracked Pol II in complex with Rad26	8tvs PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-171	100	8×ZN; 1×MG;
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Composite map of PICdeltaTFIIK form1	8uot PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q04673; Q12004; Q3E7C1;	1-171	100	1×SF4; 15×ZN; 2×MG;
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Structure of Sen1 bound RNA Polymerase II pre-termination complex	8ram PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P32914; P36053; P38902; P40422; Q00416;	1-171	100	9×ZN; 1×MG;
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Structure of Sen1-ADP.BeF3 bound RNA Polymerase II pre-termination complex	8rap PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P32914; P36053; P38902; P40422; Q00416;	1-171	100	9×ZN; 2×MG; 1×ADP; 1×BEF;
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Composite structure of EC+EC	7mei PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; P41895; P41896;	1-171	100	16×ZN; 4×MG;
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consensus map of PICdeltaTFIIK form1	8umi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q04673; Q12004; Q3E7C1;	1-171	100	1×SF4; 15×ZN; 2×MG;
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Consensus map of PICdeltaTFIIK form2	8umh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q04673; Q12004; Q3E7C1;	1-171	100	15×ZN; 2×MG; 1×SF4;
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Transcription initiation complex structures elucidate DNA opening (OC)	5fyw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P36100; P36145; P38902; P40422; P41895; P41896;	1-171	100	10×ZN; 1×MG;
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the P-lobe of RNA polymerase II pre-initiation complex	5fmf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q3E7C1;	1-171	100	2×MG; 9×ZN;
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Architecture of the RNA polymerase II-Mediator core transcription initiation complex	4v1n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A0H2UKZ8; P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P38902; P40422; P41896;	1-171	100	9×ZN; 1×MG;
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Transcription initiation complex structures elucidate DNA opening (CC)	5fz5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P36100; P36145; P38902; P40422; P41895; P41896;	1-171	100	10×ZN; 1×MG;
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Architecture of the RNA polymerase II-Mediator core transcription initiation complex	4v1o PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A0H2UKZ8; P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32569; P32570; P32585; P34162; P38304; P38782; P38902; P40422; P41896; Q99278;	1-171	100	9×ZN; 1×MG;
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RNA polymerase II-TFIIS complex	1pqv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-169	100	1×MG; 9×ZN;
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Complete 12-subunit RNA polymerase II	1nt9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-169	100
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The RNA polymerase II elongation complex from Saccharomyces cerevisiae	9ja1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P38902; P40422;	3-81	100	6×ZN; 2×MG; 1×ATP;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	5ip9.1.G	monomer	0.83	1-171		100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

P34087 (RPB7_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

DNA-directed RNA polymerase II subunit RPB7 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

117 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

DNA-directed RNA polymerase II subunit RPB7 UniProtKB InterPro STRING Interactive Modelling