P41805 | SWISS-MODEL Repository

P41805 (RL10_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Large ribosomal subunit protein uL16 UniProtKB InterPro STRING Interactive Modelling

221 aa; Sequence (Fasta) ; 8 identical sequences: Saccharomyces cerevisiae: N1NZI6, G2WIR7, C8ZD46, C7GQQ0, A7A0Y0, B3LT44; Saccharomyces boulardii: A0A0L8VLG9; Saccharomyces cerevisiae x Saccharomyces kudriavzevii: H0GK44

It is possible new templates exist for this target since these models were created.

Available Structures

33 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)	6r87 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02326; Q02753; Q04311; Q12522; Q12690; Q3E757;	2-221	100	1×ZN;
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Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)	6r84 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P40024; P49166; P49167; P87262; Q02326; Q02753; Q04311; Q12522; Q12690; Q3E757;	2-221	100	1×ZN;
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Context-specific inhibition of eukaryotic translation by macrolide antibiotics	7azy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14126; P17076; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02326; Q02753; Q12690; Q3E757;	2-221	100	1×TEL;
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Yeast Vms1-60S ribosomal subunit complex (post-state)	6r86 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02326; Q02753; Q04311; Q12522; Q12690; Q3E757;	2-221	100	1×ZN;
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Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A	5gak PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02326; Q02753; Q12690;	2-221	100	1×3HE;
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Cryo-EM structure of the ribosome-NatA complex	6hd7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P07347; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P12945; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02326; Q02753; Q08689; Q12690;	2-221	100	1×3HE;
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Subunit joining exposes nascent pre-40S rRNA for processing and quality control	6oig PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02326; Q02753; Q12690; Q3E757;	2-221	100.0
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Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1	5apn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38344; P49166; P49167; P87262; Q02326; Q02753; Q03862; Q12690;	2-221	100.0	280×MG; 6×ZN;
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Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA	7zs5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02326; Q02753; Q12522; Q12690; Q3E757;	2-221	100	1×MG;
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Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis…	5t62 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P49166; P49167; P53145; P87262; Q02326; Q02753; Q12522; Q12690;	2-221	100.0	160×MG; 2×K; 1×GNP;
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Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1	5apo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02753; Q03862; Q12690;	2-221	100.0	280×MG; 6×ZN;
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Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis…	5t6r PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P49166; P49167; P87262; Q02326; Q02753; Q12690;	2-221	100.0	86×MG; 3×K;
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Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1	4v8t PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02326; Q02753; Q03862; Q12690;	2-221	100.0	4×ZN;
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Gcn2 dimer bound to the 60S ribosomal subunit	9f58 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P0CX87; P10664; P14120; P14126; P15442; P17076; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02326; Q02753; Q12690;	3-221	100.0	5×ZN;
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Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex	8bjq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02753; Q06504; Q12387; Q12690; Q3E757;	2-219	100	206×MG; 5×ZN;
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Yeast RQC complex in state F	8agt PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12532; Q12690;	2-219	100	13×MG; 7×ZN;
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Yeast RQC complex in state H	8agv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX54; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12532; Q12690;	2-219	100	13×MG; 7×ZN;
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Yeast RQC complex in state E	8agu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX54; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12532; Q12690;	2-219	100	13×MG; 7×ZN; 1×SPD;
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Yeast RQC complex in state D	8agw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12532; Q12690;	2-219	100	13×MG; 7×ZN; 1×SPD;
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Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex	8bip PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02753; Q06504; Q12387; Q12690; Q3E757;	2-219	100	206×MG; 5×ZN;
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Yeast RQC complex in state with the RING domain of Ltn1 in the IN position	8agx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02753; Q04781; Q12532; Q12690;	2-219	100	13×MG; 7×ZN; 1×SPD;
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Yeast RQC complex in state G	8aaf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12532; Q12690;	2-219	100	13×MG; 7×ZN; 1×SPD;
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Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position	8agz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12532; Q12690;	2-219	100	13×MG; 7×ZN; 1×SPD;
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Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	6qt0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P49166; P49167; P87262; Q02326; Q02753; Q06709; Q12522; Q12690;	2-217	100	5×ZN;
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Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit	6n8o PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P49166; P49167; P53145; P87262; Q02256; Q02326; Q02753; Q12522; Q12690;	3-218	100.0
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Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	6ri5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38861; P49166; P49167; P53145; P87262; Q02326; Q02753; Q06709; Q12522; Q12690;	2-217	100	7×ZN;
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Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	6qtz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38861; P49166; P49167; P53145; P87262; Q02326; Q02753; Q06709; Q12522; Q12690;	2-217	100.0	7×ZN;
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Yeast 60S ribosomal subunit, RPL39 deletion	8p8m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02326; Q02753; Q12690;	2-216	100.0	156×MG; 1×SPM; 1×SPD; 5×ZN;
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Mouse RPL39 integrated into the yeast 60S ribosomal subunit	8p8n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P49166; P49167; P62892; P87262; Q02326; Q02753; Q12690;	2-216	100.0	152×MG; 20×CL; 1×SPD; 1×SPM; 5×ZN;
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Yeast 60S ribosomal subunit	8p8u PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02326; Q02753; Q12690;	2-216	100.0	129×MG; 24×CL; 1×SPM; 1×SPD; 5×ZN;
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Mouse RPL39L integrated into the yeast 60S ribosomal subunit	8pfr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04449; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P49166; P49167; P87262; Q02326; Q02753; Q12690; Q9CQD0;	2-216	100.0	170×MG; 24×CL; 1×SPM; 1×SPD; 5×ZN;
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Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models f…	4v4b PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13516; P02406; P04449; P04456; P05737; P05738; P05740; P05743; P05748; P05750; P05756; P06367; P14126; P17076; P25443; P26321; P26783; P26784; P32324; P32905; P38061; P38701; P41058; P49166; P49626; Q01855; Q02753;	4-168	100
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Crystal structure of the Saccharomyces cerevisiae Sqt1 bound to the N-terminus of the ribosomal pro…	4zox PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P35184;	2-15	100
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	6snt.42.A	monomer	0.82	2-219		100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

P41805 (RL10_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Large ribosomal subunit protein uL16 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

33 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

Large ribosomal subunit protein uL16 UniProtKB InterPro STRING Interactive Modelling