P43588 | SWISS-MODEL Repository

P43588 (RPN11_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Ubiquitin carboxyl-terminal hydrolase RPN11 UniProtKB InterPro STRING Interactive Modelling

306 aa; Sequence (Fasta) ; 8 identical sequences: Saccharomyces cerevisiae: N1P4N6, G2WDE3, C8Z7T7, C7GYB0, B5VI30, A7A242, B3LUL2; Saccharomyces pastorianus: A0A6C1DT11

It is possible new templates exist for this target since these models were created.

Available Structures

36 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
26S proteasome in presence of BeFx (s4)	5mpc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43593; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	18-306	100	4×ATP; 6×MG; 2×ADP;
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Structure of the 26S proteasome-Ubp6 complex in the si state (Core Particle and Lid)	7qo3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P38624; P38764; P38886; P40016; P40302; P40303; Q04062; Q06103; Q08723; Q12250; Q12377;	18-306	100
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26S proteasome in presence of ATP (s2)	5mpe PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P32496; P32565; P38764; P38886; P40016; Q04062; Q06103; Q08723; Q12250; Q12377;	18-306	100
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26S proteasome, s2 state	6fvu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	18-306	100	5×ATP; 6×MG; 1×ADP;
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26S proteasome, s4 state	6fvw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	18-306	100	4×ATP; 6×MG; 2×ADP;
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26S proteasome, s6 state	6fvy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	18-306	100	4×ATP; 6×MG; 2×ADP;
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26S proteasome, s1 state	6fvt PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	18-306	100	5×ATP; 6×MG; 1×ADP;
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26S proteasome, s3 state	6fvv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	18-306	100	2×ADP; 6×MG; 4×ATP;
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26S proteasome, s5 state	6fvx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	18-306	100	5×ATP; 6×MG; 1×ADP;
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26S proteasome in presence of ATP (s1)	5mpd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P32496; P32565; P38764; P38886; P40016; Q04062; Q06103; Q08723; Q12250; Q12377;	18-306	100
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26S proteasome Rpt1-RK -Ubp6-UbVS complex in the si state	7qo5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P0CG47; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43593; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	18-306	100	5×ATP; 6×MG; 1×ADP;
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26S proteasome in presence of AMP-PNP (s3)	5mpb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	18-306	100	5×ANP; 6×MG; 1×ADP;
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Yeast 26S proteasome bound to ubiquitinated substrate (4D motor state)	6ef3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P07818; P0CH08; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P33297; P33298; P33299; P38624; P40302; P40303; P40327; P53549; Q01939;	22-305	100.0	4×ATP; 2×ADP;
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The resting state of yeast proteasome	5wvi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	23-306	100
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Yeast proteasome-ADP-AlFx	5wvk PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	23-306	100
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yeast proteasome in Ub-engaged state (C2)	6j30 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	23-306	100
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yeast proteasome in substrate-processing state (C3-b)	6j2n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	23-306	100
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Yeast proteasome in translocation competent state (C3-a)	6j2c PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	23-306	100
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Structure of the yeast 26S proteasome lid sub-complex	3jck PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O94742; P32496; P40016; Q04062; Q06103; Q08723; Q12250; Q12377;	24-306	100.0	1×ZN;
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Structure of yeast 26S proteasome in M1 state derived from Titan dataset	3jco PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	23-298	100.0
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Structure of yeast 26S proteasome in M2 state derived from Titan dataset	3jcp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	23-298	100.0
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Yeast proteasome in resting state (C1-a)	6j2x PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	23-298	100.0
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Yeast proteasome in Ub-accepted state (C1-b)	6j2q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	23-298	100.0
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Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S prot…	4cr2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	23-298	100.0
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Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S prot…	4cr4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	23-298	100.0
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Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S prot…	4cr3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	23-298	100.0
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Structure of the 26S proteasome-Ubp6 complex	5a5b PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43593; P53549; P62987; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;	23-298	100.0
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Rpn8/Rpn11 dimer complex	5w83 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q08723;	24-222	100.0	1×ZN;
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Crystal structure of rpn11 in a heterodimer complex with rpn8, representing the active portion of t…	4owp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q08723;	24-221	100.0	1×ZN;
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Zinc-free Rpn11 in complex with Rpn8	4o8y PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q08723;	24-220	100.0	21×EDO;
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Zinc-bound Rpn11 in complex with Rpn8	4o8x PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q08723;	24-220	100.0	31×EDO; 1×ZN;
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Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form Ib	4ocm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q08723;	23-217	100.0	1×ZN;
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Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form II	4ocn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q08723;	23-217	100.0
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Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form Ia	4ocl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q08723;	23-217	100.0	1×ZN;
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Protein-protein complex between 26S proteasome regulatory subunit RPN8, RPN11, and Ubiquitin S31	5u4p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05759; Q08723;	24-217	100.0	1×ZN;
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Formation of an intricate helical bundle dictates the assembly of the 26S proteasome lid	3j47 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32496; P40016; Q04062; Q06103; Q08723; Q12250; Q12377;	230-298	100.0
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3 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
3jck.1.G	monomer	0.67	24-306	100.00
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7qo5.1.3	monomer	0.66	18-306	100.00
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5a5b.1.4	monomer	0.58	23-298	100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

P43588 (RPN11_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Ubiquitin carboxyl-terminal hydrolase RPN11 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

36 Experimental Structures

3 SWISS-MODEL models

Alignments

Background

Resolution

Ubiquitin carboxyl-terminal hydrolase RPN11 UniProtKB InterPro STRING Interactive Modelling