Q01499 (POLG_BVDVS) Bovine viral diarrhea virus (strain SD-1) (BVDV) (Mucosal disease virus)

Genome polyprotein UniProtKBInterProInteractive Modelling

3898 aa; Sequence (Fasta)

Molecule Processing
N-terminal protease
Capsid protein C
E(rns) glycoprotein
Envelope glycoprotein E1
Envelope glycoprotein E2
p7
Non-structural protein 2-3
Cysteine protease NS2
Serine protease NS3
Non-structural protein 4A
Non-structural protein 4B
Non-structural protein 5A
RNA-directed RNA polymerase

Sequence Features

 49For N-terminal protease activity
 69For N-terminal protease activity
 1447For cysteine protease NS2 activity
 1461For cysteine protease NS2 activity
 1512For cysteine protease NS2 activity
 1658Charge relay system; for serine protease NS3 activity
 1695Charge relay system; for serine protease NS3 activity
 1752Charge relay system; for serine protease NS3 activity
 1144-1164Helical
 1189-1209Helical
 1217-1237Helical
 1247-1267Helical
 1281-1301Helical
 1360-1380Helical
 1568-1588Helical
 168-169Cleavage; by autolysis
 270-271Cleavage; by host signal peptidase
 497-498Cleavage
 659-660Cleavage; by host signal peptidase
 1066-1067Cleavage; by host signal peptidase; partial
 1136-1137Cleavage; by host signal peptidase
 1589-1590Cleavage; partial; cysteine protease NS2
 2272-2273Cleavage; by serine protease NS3
 2336-2337Cleavage; by serine protease NS3
 2683-2684Cleavage; by serine protease NS3
 3179-3180Cleavage; by serine protease NS3
 1-168Peptidase C53, pestivirus Npro
IPR008751PF05550
 173-228Capsid protein C, pestivirus
IPR021824PF11889
 694-1064Pestivirus envelope glycoprotein E2
IPR032521PF16329
 1323-1522Pestivirus nonstructural protein 2
IPR022120PF12387
 1590-1800Pestivirus NS3, peptidase S31
IPR000280PF05578
 1807-1947DEAD box, Flavivirus
IPR011492PF07652
 1985-2099Helicase, C-terminal
IPR001650PF00271
 3459-3689RNA dependent RNA polymerase, hepatitis C virus
IPR002166PF00998

Sequence Alignments

Envelope glycoprotein E2 660-1066; PRO_0000038041

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Structure of BVDV1 envelope glycoprotein E2, pH8homo-2-mer NAG;2yq2 696-1025
Structure of BVDV1 envelope glycoprotein E2, pH5homo-2-mer NAG;2yq3 700-1023

Non-structural protein 2-3 1137-2272; PRO_0000038043

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -1.285wx1.1.A1590-2272
90.34

Serine protease NS3 1590-2272; PRO_0000038045

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -1.285wx1.1.A1590-2272
90.34

RNA-directed RNA polymerase 3180-3898; PRO_0000038049

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -1.495y6r.1.A3191-3857
72.25
monomer -1.611s4f.2.A3271-3853
94.11