Q8N371 (KDM8_HUMAN) Homo sapiens (Human)

Bifunctional peptidase and arginyl-hydroxylase JMJD5 UniProtKBInterProSTRINGInteractive Modelling

416 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3); 1 identical sequence: Homo sapiens: A0A0S2Z5T1

Available Structures

26 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
Human JMJD5 (Q275C) in complex with Mn(II), NOG and RPS6-A138C (129-144) (complex-2)
6f4q
 Heteromer
P62753; 		183-416
1×MN; 1×OGA; 1×TRS; 2×GOL;
Assess
Human JMJD5 (W414C) in complex with Mn(II), NOG and RCCD1 (139-143) (complex-5)
6f4t
 Heteromer
A6NED2; 		183-416
1×MN; 1×OGA; 3×GOL; 1×TRS;
Assess
Human JMJD5 (N308C) in complex with Mn(II), NOG and RCCD1 (139-143) (complex-3)
6f4r
 Heteromer
A6NED2; 		183-416
1×MN; 1×OGA; 1×TRS;
Assess
Human JMJD5 in complex with MN, NOG and RPS6 (129-144) (complex-1)
6f4p
 Heteromer
P62753; 		183-416
1×MN; 1×OGA; 1×TRS;
Assess
Human JMJD5 (N308C) in complex with Mn(II), 2OG and RCCD1 (139-143) (complex-4)
6f4s
 Heteromer
A6NED2; 		183-416
1×MN; 1×AKG; 1×TRS; 1×GOL;
Assess
Crystal structure of JMJD5 catalytic core domain in complex with nickle and alpha-KG
3uyj
homo-2-mer173-416
2×NI; 2×AKG;
Assess
Human JMJD5 in complex with MN and 2OG.
6f4n
monomer174-416
1×MN; 1×AKG;
Assess
Crystal Structure of a Jumonji Domain-containing Protein JMJD5
4gaz
monomer176-416
1×NI; 1×OGA;
Assess
Crystal structure of JMJD5 domain of human Lysine-specific demethylase 8 (KDM8) in complex with N-o…
4aap
monomer180-416
2×ZN; 1×OGA;
Assess
JMJD5 in complex with 2-oxoglutarate
4gjz
monomer183-416
1×CO; 1×AKG; 1×BME;
Assess
JMJD5 in complex with N-Oxalylglycine
4gjy
monomer183-416
1×CO; 1×OGA;
Assess
Human JMJD5 in complex with Mn(II) and Succinate.
6f4o
monomer183-416
1×MN; 1×SIN; 1×TRS;
Assess
JmjC domain-containing protein 5 (JMJD5) in complex with Mn and L-2-hydroxyglutarate
6i9n
monomer183-416
1×MN; 1×S2G; 1×TRS; 1×GOL;
Assess
JmjC domain-containing protein 5 (JMJD5) in complex with Mn and (S)-2-(1-hydroxy-2,5-dioxopyrrolidi…
7uq3
monomer183-416
1×MN; 1×O2U; 2×GOL;
Assess
JmjC domain-containing protein 5 (JMJD5) in complex with Mn and pyridine-2,4-dicarboxylic acid (2,4…
6i9l
monomer183-416
1×MN; 1×PD2; 1×TRS;
Assess
Crystal structure of human JMJD5 jmj-c domain
4qu1
monomer183-416
1×NI; 1×AKG; 1×GOL;
Assess
Human JMJD5 in complex with MN and 5-((4-methoxybenzyl)amino)pyridine-2,4-dicarboxylic acid.
7dyt
monomer183-416
1×MN; 1×HR3;
Assess
JmjC domain-containing protein 5 (JMJD5) in complex with Mn and R-2-hydroxyglutarate
6i9m
monomer183-416
1×MN; 1×2HG; 1×TRS; 3×GOL;
Assess
Human JMJD5 in its apo form.
6f4m
monomer183-416
Assess
Human JMJD5 in complex with MN and 5-((4-phenylbutyl)amino)pyridine-2,4-dicarboxylic acid.
7dyu
monomer183-416
2×TRS; 1×MN; 1×HR9;
Assess
Human JMJD5 in complex with MN and 5-(benzylamino)pyridine-2,4-dicarboxylic acid.
7dyv
monomer183-416
1×MN; 1×HRF;
Assess
Complex structure of JMJD5 and Symmetric Monomethyl-Arginine (MMA)
6avs
monomer183-416
1×ZN; 1×NMM;
Assess
Human JMJD5 in complex with MN and 5-((2-methoxybenzyl)amino)pyridine-2,4-dicarboxylic acid.
7dyw
monomer183-416
1×HRL; 1×MN;
Assess
Human JMJD5 in complex with MN and 5-((2-cyclopropylbenzyl)amino)pyridine-2,4-dicarboxylic acid.
7dyx
monomer183-416
1×MN; 1×HRR;
Assess
Complex structure of JMJD5 and substrate
5fbj
monomer183-416
1×AKG; 1×NMM; 1×ZN;
Assess
Complex structure of JMJD5 and Symmetric Dimethyl-Arginine (SDMA)
6ax3
monomer184-416
1×2MR; 1×AKG; 1×ZN;
Assess

1 SWISS-MODEL model

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
6f4n.1.Amonomer0.87174-416
1×MN; 1×AKG;100.00
Assess

3 SWISS-MODEL models built on isoform sequence

TemplateIsoformOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
Isoform 26f4r.1.Amonomer0.63122-220
58.59
Assess
Isoform 36f4n.1.Amonomer0.85212-454
1×MN; 1×AKG;100.00
Assess
Isoform 38a82.1.Amonomer0.56153-454
1×FE;17.27
Assess