Q8N371 (KDM8_HUMAN) Homo sapiens (Human)
Bifunctional peptidase and arginyl-hydroxylase JMJD5 UniProtKBInterProSTRINGInteractive Modelling
Available Structures
26 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| Human JMJD5 (Q275C) in complex with Mn(II), NOG and RPS6-A138C (129-144) (complex-2) |
Heteromer P62753; | 97.86 | 1×MN; 1×OGA; 1×TRS; 2×GOL; | |||
| Human JMJD5 (W414C) in complex with Mn(II), NOG and RCCD1 (139-143) (complex-5) |
Heteromer A6NED2; | 98.72 | 1×MN; 1×OGA; 3×GOL; 1×TRS; | |||
| Human JMJD5 (N308C) in complex with Mn(II), NOG and RCCD1 (139-143) (complex-3) |
Heteromer A6NED2; | 97.86 | 1×MN; 1×OGA; 1×TRS; | |||
| Human JMJD5 in complex with MN, NOG and RPS6 (129-144) (complex-1) |
Heteromer P62753; | 98.29 | 1×MN; 1×OGA; 1×TRS; | |||
| Human JMJD5 (N308C) in complex with Mn(II), 2OG and RCCD1 (139-143) (complex-4) |
Heteromer A6NED2; | 98.72 | 1×MN; 1×AKG; 1×TRS; 1×GOL; | |||
| Crystal structure of JMJD5 catalytic core domain in complex with nickle and alpha-KG | homo-2-mer | 100.0 | 2×NI; 2×AKG; | |||
| Human JMJD5 in complex with MN and 2OG. | monomer | 100.0 | 1×MN; 1×AKG; | |||
| Crystal Structure of a Jumonji Domain-containing Protein JMJD5 | monomer | 100.0 | 1×NI; 1×OGA; | |||
| Crystal structure of JMJD5 domain of human Lysine-specific demethylase 8 (KDM8) in complex with N-o… | monomer | 100.0 | 2×ZN; 1×OGA; | |||
| JMJD5 in complex with 2-oxoglutarate | monomer | 100.0 | 1×CO; 1×AKG; 1×BME; | |||
| JMJD5 in complex with N-Oxalylglycine | monomer | 100.0 | 1×CO; 1×OGA; | |||
| Human JMJD5 in complex with Mn(II) and Succinate. | monomer | 100.0 | 1×MN; 1×SIN; 1×TRS; | |||
| JmjC domain-containing protein 5 (JMJD5) in complex with Mn and L-2-hydroxyglutarate | monomer | 100.0 | 1×MN; 1×S2G; 1×TRS; 1×GOL; | |||
| JmjC domain-containing protein 5 (JMJD5) in complex with Mn and (S)-2-(1-hydroxy-2,5-dioxopyrrolidi… | monomer | 100.0 | 1×MN; 1×O2U; 2×GOL; | |||
| JmjC domain-containing protein 5 (JMJD5) in complex with Mn and pyridine-2,4-dicarboxylic acid (2,4… | monomer | 100.0 | 1×MN; 1×PD2; 1×TRS; | |||
| Crystal structure of human JMJD5 jmj-c domain | monomer | 100 | 1×NI; 1×AKG; 1×GOL; | |||
| Human JMJD5 in complex with MN and 5-((4-methoxybenzyl)amino)pyridine-2,4-dicarboxylic acid. | monomer | 100.0 | 1×MN; 1×HR3; | |||
| JmjC domain-containing protein 5 (JMJD5) in complex with Mn and R-2-hydroxyglutarate | monomer | 100.0 | 1×MN; 1×2HG; 1×TRS; 3×GOL; | |||
| Human JMJD5 in its apo form. | monomer | 98.29 | ||||
| Human JMJD5 in complex with MN and 5-((4-phenylbutyl)amino)pyridine-2,4-dicarboxylic acid. | monomer | 100.0 | 2×TRS; 1×MN; 1×HR9; | |||
| Human JMJD5 in complex with MN and 5-(benzylamino)pyridine-2,4-dicarboxylic acid. | monomer | 100.0 | 1×MN; 1×HRF; | |||
| Complex structure of JMJD5 and Symmetric Monomethyl-Arginine (MMA) | monomer | 100 | 1×ZN; 1×NMM; | |||
| Human JMJD5 in complex with MN and 5-((2-methoxybenzyl)amino)pyridine-2,4-dicarboxylic acid. | monomer | 100 | 1×HRL; 1×MN; | |||
| Human JMJD5 in complex with MN and 5-((2-cyclopropylbenzyl)amino)pyridine-2,4-dicarboxylic acid. | monomer | 100.0 | 1×MN; 1×HRR; | |||
| Complex structure of JMJD5 and substrate | monomer | 100 | 1×AKG; 1×NMM; 1×ZN; | |||
| Complex structure of JMJD5 and Symmetric Dimethyl-Arginine (SDMA) | monomer | 100 | 1×2MR; 1×AKG; 1×ZN; | |||
1 SWISS-MODEL model
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 6f4n.1.A | monomer | 0.87 | 1×MN; 1×AKG; | 100.00 | ||
3 SWISS-MODEL models built on isoform sequence
| Isoform | Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|---|
| Isoform 2 | 6f4r.1.A | monomer | 0.63 | 58.59 | |||
| Isoform 3 | 6f4n.1.A | monomer | 0.85 | 1×MN; 1×AKG; | 100.00 | ||
| Isoform 3 | 8a82.1.A | monomer | 0.56 | 1×FE; | 17.27 | ||