Q9UBC3 (DNM3B_HUMAN) Homo sapiens (Human)
DNA (cytosine-5)-methyltransferase 3B UniProtKBInterProSTRINGInteractive Modelling
853 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4; Isoform 5; Isoform 6; Isoform 7; Isoform 8);
3 identical sequences: Pan troglodytes: A0A2I3SYU8, A0A6D2YAK8; Pan paniscus: A0A2R9AZX9
It is possible new templates exist for this target since these models were created.
Available Structures
32 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| Cryo-EM structure of human DNMT3B homo-tetramer (form I) |
Heteromer | 100.0 | 2×SAH; 12×ZN; | |||
| Cryo-EM structure of human DNMT3B homo-tetramer (form II) |
Heteromer | 100.0 | 2×SAH; 9×ZN; | |||
| Cryo-EM structure of human DNMT3B homo-hexamer |
Heteromer | 100.0 | 3×SAH; 12×ZN; | |||
| Cryo-EM structure of human DNMT3B homo-trimer |
Heteromer | 100.0 | 2×SAH; 6×ZN; | |||
| Crystal structure of DNMT3B(K777A)-DNMT3L in complex with CpGpT DNA |
Heteromer Q9UJW3; | 99.66 | 2×SAH; 2×MG; | |||
| Crystal structure of DNMT3B-DNMT3L in complex with CpApG DNA |
Heteromer Q9UJW3; | 100 | 2×MG; 2×SAH; | |||
| Crystal structure of DNMT3B(Q772R)-DNMT3L in complex with CpGpT DNA |
Heteromer Q9UJW3; | 99.66 | 3×MG; 2×SAH; | |||
| Crystal structure of DNMT3B-DNMT3L in complex with CpGpT DNA |
Heteromer Q9UJW3; | 100 | 2×SAH; 2×MG; | |||
| Crystal structure of DNMT3B(N779A)-DNMT3L in complex with CpGpT DNA |
Heteromer Q9UJW3; | 99.66 | 2×GOL; 2×SAH; | |||
| Crystal structure of DNMT3B-DNMT3L in complex with CpGpA DNA |
Heteromer Q9UJW3; | 100 | 2×MG; 2×SAH; | |||
| The cryo-EM structure of the human DNMT3A2-DNMT3B3 complex bound to nucleosome. |
Heteromer P02281; P06897; P62799; P84233; Q9Y6K1; | 100.0 | 3×CL; 2×SAH; | |||
| Crystal structure of human DNMT3B-DNMT3L in complex with DNA containing CpGpT site |
Heteromer Q9UJW3; | 100 | 2×SAH; | |||
| Crystal structure of human DNMT3B (Q772R)-DNMT3L complex |
Heteromer Q9UJW3; | 99.63 | 2×SAH; 2×FMT; | |||
| Crystal structure of human DNMT3B-DNMT3L in complex with DNA containing CpGpG site |
Heteromer Q9UJW3; | 100 | 2×SAH; | |||
| Crystal structure of human DNMT3B-DNMT3L complex (II) |
Heteromer Q9UJW3; | 100.0 | 2×FMT; 2×SAH; | |||
| Human DNMT3B mutant-R823G |
Heteromer Q9UJW3; | 99.64 | 2×SAH; | |||
| DNMT3B in complex with harmine |
Heteromer Q9UJW3; | 100.0 | 2×HRM; | |||
| Crystal structure of human DNMT3B-DNMT3L complex (I) |
Heteromer Q9UJW3; | 100.0 | 2×SAH; | |||
| Structural basis of the recognition of H3K36me3 by DNMT3B PWWP domain |
Heteromer Q71DI3; | 100.0 | ||||
| Crystal structure of the macro-oligomeric form of DNMT3B methyltransferase domain. | homo-4-mer | 100.0 | 4×SAH; | |||
| Crystal structure of ADD domain of the human DNMT3B methyltransferase | homo-3-mer | 100 | 9×ZN; 3×BR; | |||
| Human DNMT3B PWWP domain in complex with 5-[(2-Hydroxyethyl)(propyl)amino]-1-pentanol | homo-2-mer | 100.0 | 2×96E; 5×SO4; | |||
| Human DNMT3B PWWP domain in complex with N-isopropyl-1,5-dimethylhexylamine (Metron S) | homo-2-mer | 100.0 | 2×9AE; 8×SO4; | |||
| Human DNMT3B PWWP domain in complex with N,N-bis(2-hydroxypropyl)ethanolamine | homo-2-mer | 100.0 | 5×SO4; 2×962; | |||
| Human DNMT3B PWWP domain in complex with 4-(dipropylamino)butyronitrile | homo-2-mer | 100.0 | 2×9AH; 9×SO4; | |||
| Human DNMT3B PWWP domain in complex with 6-dipropylamino-1-hexanol | homo-2-mer | 100.0 | 2×96K; 10×SO4; | |||
| Human DNMT3B PWWP domain in complex with triisopropanolamine | monomer | 100 | 1×96H; 3×SO4; | |||
| The PWWP domain of human DNA (CYTOSINE-5-)-METHYLTRANSFERASE 3 BETA in complex with a bis-tris mole… | monomer | 100.0 | 1×BTB; 2×SO4; | |||
| Human DNMT3B PWWP domain in complex with N1-(2-hydroxyethyl)-2-methyl-1,2-propanediamine | monomer | 100.0 | 1×9AK; 2×SO4; | |||
| The PWWP domain of Human DNA (cytosine-5-)-methyltransferase 3 beta | monomer | 100 | ||||
| Human DNMT3B PWWP domain in complex with ethambutol | monomer | 100.0 | 1×95E; 3×SO4; | |||
| Human DNMT3B PWWP domain in complex with choline | monomer | 100.0 | 1×CHT; 6×SO4; | |||
3 SWISS-MODEL models
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 1khc.1.A | monomer | 0.75 | 93.75 | |||
| 4u7t.1.A | monomer | 0.73 | 3×ZN; 1×SAH; | 70.71 | ||
| 8eii.1.A | homo-4-mer | 0.64 | 2×SAH; 9×ZN; | 100.00 | ||
22 SWISS-MODEL models built on isoform sequence
| Isoform | Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|---|
| Isoform 2 | 1khc.1.A | monomer | 0.77 | 93.88 | |||
| Isoform 2 | 4u7t.1.A | monomer | 0.73 | 3×ZN; 1×SAH; | 70.71 | ||
| Isoform 2 | 8eii.1.A | homo-4-mer | 0.63 | 2×SAH; 9×ZN; | 100.00 | ||
| Isoform 3 | 1khc.1.A | monomer | 0.80 | 93.88 | |||
| Isoform 3 | 4u7t.1.A | monomer | 0.73 | 3×ZN; 1×SAH; | 70.59 | ||
| Isoform 3 | 8eii.1.A | homo-4-mer | 0.66 | 2×SAH; 9×ZN; | 99.46 | ||
| Isoform 4 | 1khc.1.A | monomer | 0.80 | 93.88 | |||
| Isoform 4 | 4u7t.1.A | monomer | 0.72 | 3×ZN; | 68.20 | ||
| Isoform 4 | 8eik.1.B | monomer | 0.71 | 3×ZN; | 100.00 | ||
| Isoform 5 | 1khc.1.A | monomer | 0.79 | 93.88 | |||
| Isoform 5 | 4u7t.1.A | monomer | 0.72 | 3×ZN; | 66.12 | ||
| Isoform 5 | 8eii.1.A | homo-4-mer | 0.66 | 9×ZN; | 100.00 | ||
| Isoform 6 | 1khc.1.A | monomer | 0.77 | 93.88 | |||
| Isoform 6 | 4u7t.1.A | monomer | 0.73 | 3×ZN; 1×SAH; | 70.71 | ||
| Isoform 6 | 8eii.1.A | homo-4-mer | 0.63 | 2×SAH; 9×ZN; | 100.00 | ||
| Isoform 7 | 1khc.1.A | monomer | 0.75 | 93.88 | |||
| Isoform 7 | 4u7t.1.A | monomer | 0.72 | 3×ZN; 1×SAH; | 70.59 | ||
| Isoform 7 | 8eii.1.A | homo-4-mer | 0.66 | 2×SAH; 9×ZN; | 99.46 | ||
| Isoform 7 | 6r3e.1.A | monomer | 0.54 | 92.76 | |||
| Isoform 8 | 1khc.1.A | monomer | 0.76 | 93.88 | |||
| Isoform 8 | 4u7t.1.A | monomer | 0.73 | 3×ZN; 1×SAH; | 70.59 | ||
| Isoform 8 | 8eii.1.A | homo-4-mer | 0.66 | 2×SAH; 9×ZN; | 99.46 | ||