SMTL ID : 1aa1.1

ACTIVATED SPINACH RUBISCO IN COMPLEX WITH THE PRODUCT 3-PHOSPHOGLYCERATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-8-8-mer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: K.201, D.203, E.204, H.294 Ligands: 3PG.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.203, A:E.204, H2O.6 MG.4: 5 residues within 4Å: Chain C: K.201, D.203, E.204, H.294 Ligands: 3PG.5 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.203, C:E.204, H2O.16 MG.7: 5 residues within 4Å: Chain E: K.201, D.203, E.204, H.294 Ligands: 3PG.8 3 PLIP interactions: 2 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.203, E:E.204, H2O.25 MG.10: 5 residues within 4Å: Chain G: K.201, D.203, E.204, H.294 Ligands: 3PG.11 3 PLIP interactions: 2 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:D.203, G:E.204, H2O.35 MG.13: 5 residues within 4Å: Chain I: K.201, D.203, E.204, H.294 Ligands: 3PG.14 3 PLIP interactions: 2 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:D.203, I:E.204, H2O.44 MG.16: 5 residues within 4Å: Chain K: K.201, D.203, E.204, H.294 Ligands: 3PG.17 3 PLIP interactions: 2 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:D.203, K:E.204, H2O.54 MG.19: 5 residues within 4Å: Chain M: K.201, D.203, E.204, H.294 Ligands: 3PG.20 3 PLIP interactions: 2 interactions with chain M, 1 Ligand-Water interactions Metal complexes: M:D.203, M:E.204, H2O.64 MG.22: 5 residues within 4Å: Chain O: K.201, D.203, E.204, H.294 Ligands: 3PG.23 3 PLIP interactions: 2 interactions with chain O, 1 Ligand-Water interactions Metal complexes: O:D.203, O:E.204, H2O.74

16 x 3PG: 3-PHOSPHOGLYCERIC ACID(Non-covalent)

3PG.2: 14 residues within 4Å: Chain A: T.173, K.175, K.177, K.201, D.203, E.204, G.380, G.381, F.402, G.403, G.404 Chain M: W.66, N.123 Ligands: MG.1 Ligand excluded by PLIP 3PG.3: 4 residues within 4Å: Chain A: R.295, H.298, G.329 Chain M: G.126 Ligand excluded by PLIP 3PG.5: 14 residues within 4Å: Chain C: T.173, K.175, K.177, K.201, D.203, E.204, G.380, G.381, F.402, G.403, G.404 Chain K: W.66, N.123 Ligands: MG.4 Ligand excluded by PLIP 3PG.6: 4 residues within 4Å: Chain C: R.295, H.298, G.329 Chain K: G.126 Ligand excluded by PLIP 3PG.8: 14 residues within 4Å: Chain E: T.173, K.175, K.177, K.201, D.203, E.204, G.380, G.381, F.402, G.403, G.404 Chain I: W.66, N.123 Ligands: MG.7 Ligand excluded by PLIP 3PG.9: 4 residues within 4Å: Chain E: R.295, H.298, G.329 Chain I: G.126 Ligand excluded by PLIP 3PG.11: 14 residues within 4Å: Chain G: T.173, K.175, K.177, K.201, D.203, E.204, G.380, G.381, F.402, G.403, G.404 Chain O: W.66, N.123 Ligands: MG.10 Ligand excluded by PLIP 3PG.12: 4 residues within 4Å: Chain G: R.295, H.298, G.329 Chain O: G.126 Ligand excluded by PLIP 3PG.14: 14 residues within 4Å: Chain E: W.66, N.123 Chain I: T.173, K.175, K.177, K.201, D.203, E.204, G.380, G.381, F.402, G.403, G.404 Ligands: MG.13 Ligand excluded by PLIP 3PG.15: 4 residues within 4Å: Chain E: G.126 Chain I: R.295, H.298, G.329 Ligand excluded by PLIP 3PG.17: 14 residues within 4Å: Chain C: W.66, N.123 Chain K: T.173, K.175, K.177, K.201, D.203, E.204, G.380, G.381, F.402, G.403, G.404 Ligands: MG.16 Ligand excluded by PLIP 3PG.18: 4 residues within 4Å: Chain C: G.126 Chain K: R.295, H.298, G.329 Ligand excluded by PLIP 3PG.20: 14 residues within 4Å: Chain A: W.66, N.123 Chain M: T.173, K.175, K.177, K.201, D.203, E.204, G.380, G.381, F.402, G.403, G.404 Ligands: MG.19 Ligand excluded by PLIP 3PG.21: 4 residues within 4Å: Chain A: G.126 Chain M: R.295, H.298, G.329 Ligand excluded by PLIP 3PG.23: 14 residues within 4Å: Chain G: W.66, N.123 Chain O: T.173, K.175, K.177, K.201, D.203, E.204, G.380, G.381, F.402, G.403, G.404 Ligands: MG.22 Ligand excluded by PLIP 3PG.24: 4 residues within 4Å: Chain G: G.126 Chain O: R.295, H.298, G.329 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taylor, T.C. et al., Structure of a product complex of spinach ribulose-1,5-bisphosphate carboxylase/oxygenase. Biochemistry (1997)

Release Date

1997-07-07

Peptides

RIBULOSE BISPHOSPHATE CARBOXYLASE (LARGE CHAIN): ACEGIKMO
RIBULOSE BISPHOSPHATE CARBOXYLASE (SMALL CHAIN): BDFHJLNP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

C
B

E
E

G
H

I
L

K
B

M
E

O
H

B
S

D
C

F
F

H
I

J
S

L
C

N
F

P
I

RIBULOSE BISPHOSPHATE CARBOXYLASE (LARGE CHAIN)

RIBULOSE BISPHOSPHATE CARBOXYLASE (SMALL CHAIN)

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