SMTL ID : 1aa1.1

ACTIVATED SPINACH RUBISCO IN COMPLEX WITH THE PRODUCT 3-PHOSPHOGLYCERATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-oligomer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: K.201, D.203, E.204, H.294 Ligands: 3PG.5 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.203, A:E.204, H2O.894 MG.2: 5 residues within 4Å: Chain C: K.201, D.203, E.204, H.294 Ligands: 3PG.7 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.203, C:E.204, H2O.145 MG.3: 5 residues within 4Å: Chain E: K.201, D.203, E.204, H.294 Ligands: 3PG.9 3 PLIP interactions: 2 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.203, E:E.204, H2O.398 MG.4: 5 residues within 4Å: Chain G: K.201, D.203, E.204, H.294 Ligands: 3PG.11 3 PLIP interactions: 2 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:D.203, G:E.204, H2O.654 MG.13: 5 residues within 4Å: Chain I: K.201, D.203, E.204, H.294 Ligands: 3PG.17 3 PLIP interactions: 2 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:D.203, I:E.204, H2O.1902 MG.14: 5 residues within 4Å: Chain K: K.201, D.203, E.204, H.294 Ligands: 3PG.19 3 PLIP interactions: 2 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:D.203, K:E.204, H2O.1153 MG.15: 5 residues within 4Å: Chain M: K.201, D.203, E.204, H.294 Ligands: 3PG.21 3 PLIP interactions: 2 interactions with chain M, 1 Ligand-Water interactions Metal complexes: M:D.203, M:E.204, H2O.1406 MG.16: 5 residues within 4Å: Chain O: K.201, D.203, E.204, H.294 Ligands: 3PG.23 3 PLIP interactions: 2 interactions with chain O, 1 Ligand-Water interactions Metal complexes: O:D.203, O:E.204, H2O.1662

16 x 3PG: 3-PHOSPHOGLYCERIC ACID(Non-covalent)

3PG.5: 14 residues within 4Å: Chain A: T.173, K.175, K.177, K.201, D.203, E.204, G.380, G.381, F.402, G.403, G.404 Chain M: W.66, N.123 Ligands: MG.1 Ligand excluded by PLIP 3PG.6: 4 residues within 4Å: Chain A: R.295, H.298, G.329 Chain M: G.126 Ligand excluded by PLIP 3PG.7: 14 residues within 4Å: Chain C: T.173, K.175, K.177, K.201, D.203, E.204, G.380, G.381, F.402, G.403, G.404 Chain K: W.66, N.123 Ligands: MG.2 Ligand excluded by PLIP 3PG.8: 4 residues within 4Å: Chain C: R.295, H.298, G.329 Chain K: G.126 Ligand excluded by PLIP 3PG.9: 14 residues within 4Å: Chain E: T.173, K.175, K.177, K.201, D.203, E.204, G.380, G.381, F.402, G.403, G.404 Chain I: W.66, N.123 Ligands: MG.3 Ligand excluded by PLIP 3PG.10: 4 residues within 4Å: Chain E: R.295, H.298, G.329 Chain I: G.126 Ligand excluded by PLIP 3PG.11: 14 residues within 4Å: Chain G: T.173, K.175, K.177, K.201, D.203, E.204, G.380, G.381, F.402, G.403, G.404 Chain O: W.66, N.123 Ligands: MG.4 Ligand excluded by PLIP 3PG.12: 4 residues within 4Å: Chain G: R.295, H.298, G.329 Chain O: G.126 Ligand excluded by PLIP 3PG.17: 14 residues within 4Å: Chain E: W.66, N.123 Chain I: T.173, K.175, K.177, K.201, D.203, E.204, G.380, G.381, F.402, G.403, G.404 Ligands: MG.13 Ligand excluded by PLIP 3PG.18: 4 residues within 4Å: Chain E: G.126 Chain I: R.295, H.298, G.329 Ligand excluded by PLIP 3PG.19: 14 residues within 4Å: Chain C: W.66, N.123 Chain K: T.173, K.175, K.177, K.201, D.203, E.204, G.380, G.381, F.402, G.403, G.404 Ligands: MG.14 Ligand excluded by PLIP 3PG.20: 4 residues within 4Å: Chain C: G.126 Chain K: R.295, H.298, G.329 Ligand excluded by PLIP 3PG.21: 14 residues within 4Å: Chain A: W.66, N.123 Chain M: T.173, K.175, K.177, K.201, D.203, E.204, G.380, G.381, F.402, G.403, G.404 Ligands: MG.15 Ligand excluded by PLIP 3PG.22: 4 residues within 4Å: Chain A: G.126 Chain M: R.295, H.298, G.329 Ligand excluded by PLIP 3PG.23: 14 residues within 4Å: Chain G: W.66, N.123 Chain O: T.173, K.175, K.177, K.201, D.203, E.204, G.380, G.381, F.402, G.403, G.404 Ligands: MG.16 Ligand excluded by PLIP 3PG.24: 4 residues within 4Å: Chain G: G.126 Chain O: R.295, H.298, G.329 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taylor, T.C. et al., Structure of a product complex of spinach ribulose-1,5-bisphosphate carboxylase/oxygenase. Biochemistry (1997)

Release Date

1997-07-07

Peptides

RIBULOSE BISPHOSPHATE CARBOXYLASE (LARGE CHAIN): ACEGIKMO
RIBULOSE BISPHOSPHATE CARBOXYLASE (SMALL CHAIN): BDFHJLNP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

C
B

E
E

G
H

I
L

K
B

M
E

O
H

B
S

D
C

F
F

H
I

J
S

L
C

N
F

P
I

RIBULOSE BISPHOSPHATE CARBOXYLASE (LARGE CHAIN)

RIBULOSE BISPHOSPHATE CARBOXYLASE (SMALL CHAIN)

Related Entries With Identical Sequence