- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)
FAD.1: 30 residues within 4Å:- Chain A: W.98, P.99, I.100, S.101, I.102, G.103, R.104, N.105, S.106, P.169, D.170, L.171, G.174, S.175, G.178, N.179, E.182, G.184, V.185, Y.187, G.260, I.261, V.262, W.413, I.414, H.422, F.424, R.504, K.545
- Ligands: NCR.2
21 PLIP interactions:21 interactions with chain A- Hydrophobic interactions: A:L.171, A:W.413, A:I.414
- Hydrogen bonds: A:S.101, A:S.101, A:I.102, A:G.103, A:R.104, A:N.105, A:N.105, A:D.170, A:D.170, A:S.175, A:N.179, A:V.185, A:V.185, A:V.262, A:R.504, A:R.504, A:K.545
- pi-Stacking: A:F.424
FAD.3: 30 residues within 4Å:- Chain B: W.98, P.99, I.100, S.101, I.102, G.103, R.104, N.105, S.106, P.169, D.170, L.171, G.174, S.175, G.178, N.179, E.182, G.184, V.185, Y.187, G.260, I.261, V.262, W.413, I.414, H.422, F.424, R.504, K.545
- Ligands: NCR.4
22 PLIP interactions:22 interactions with chain B- Hydrophobic interactions: B:L.171, B:W.413, B:I.414
- Hydrogen bonds: B:S.101, B:S.101, B:I.102, B:G.103, B:R.104, B:N.105, B:N.105, B:D.170, B:S.175, B:N.179, B:E.182, B:V.185, B:V.185, B:Y.187, B:V.262, B:R.504, B:R.504, B:K.545
- pi-Stacking: B:F.424
FAD.5: 30 residues within 4Å:- Chain C: W.98, P.99, I.100, S.101, I.102, G.103, R.104, N.105, S.106, P.169, D.170, L.171, G.174, S.175, G.178, N.179, E.182, G.184, V.185, Y.187, G.260, I.261, V.262, W.413, I.414, H.422, F.424, R.504, K.545
- Ligands: NCR.6
21 PLIP interactions:21 interactions with chain C- Hydrophobic interactions: C:L.171, C:W.413, C:I.414
- Hydrogen bonds: C:S.101, C:S.101, C:I.102, C:G.103, C:R.104, C:N.105, C:N.105, C:D.170, C:D.170, C:S.175, C:N.179, C:V.185, C:V.185, C:V.262, C:R.504, C:R.504, C:K.545
- pi-Stacking: C:F.424
FAD.7: 30 residues within 4Å:- Chain D: W.98, P.99, I.100, S.101, I.102, G.103, R.104, N.105, S.106, P.169, D.170, L.171, G.174, S.175, G.178, N.179, E.182, G.184, V.185, Y.187, G.260, I.261, V.262, W.413, I.414, H.422, F.424, R.504, K.545
- Ligands: NCR.8
22 PLIP interactions:22 interactions with chain D- Hydrophobic interactions: D:L.171, D:W.413, D:I.414
- Hydrogen bonds: D:S.101, D:S.101, D:I.102, D:G.103, D:R.104, D:N.105, D:N.105, D:D.170, D:S.175, D:N.179, D:E.182, D:V.185, D:V.185, D:Y.187, D:V.262, D:R.504, D:R.504, D:K.545
- pi-Stacking: D:F.424
FAD.9: 30 residues within 4Å:- Chain E: W.98, P.99, I.100, S.101, I.102, G.103, R.104, N.105, S.106, P.169, D.170, L.171, G.174, S.175, G.178, N.179, E.182, G.184, V.185, Y.187, G.260, I.261, V.262, W.413, I.414, H.422, F.424, R.504, K.545
- Ligands: NCR.10
21 PLIP interactions:21 interactions with chain E- Hydrophobic interactions: E:L.171, E:W.413, E:I.414
- Hydrogen bonds: E:S.101, E:S.101, E:I.102, E:G.103, E:R.104, E:N.105, E:N.105, E:D.170, E:D.170, E:S.175, E:N.179, E:V.185, E:V.185, E:V.262, E:R.504, E:R.504, E:K.545
- pi-Stacking: E:F.424
FAD.11: 30 residues within 4Å:- Chain F: W.98, P.99, I.100, S.101, I.102, G.103, R.104, N.105, S.106, P.169, D.170, L.171, G.174, S.175, G.178, N.179, E.182, G.184, V.185, Y.187, G.260, I.261, V.262, W.413, I.414, H.422, F.424, R.504, K.545
- Ligands: NCR.12
22 PLIP interactions:22 interactions with chain F- Hydrophobic interactions: F:L.171, F:W.413, F:I.414
- Hydrogen bonds: F:S.101, F:S.101, F:I.102, F:G.103, F:R.104, F:N.105, F:N.105, F:D.170, F:S.175, F:N.179, F:E.182, F:V.185, F:V.185, F:Y.187, F:V.262, F:R.504, F:R.504, F:K.545
- pi-Stacking: F:F.424
FAD.13: 30 residues within 4Å:- Chain G: W.98, P.99, I.100, S.101, I.102, G.103, R.104, N.105, S.106, P.169, D.170, L.171, G.174, S.175, G.178, N.179, E.182, G.184, V.185, Y.187, G.260, I.261, V.262, W.413, I.414, H.422, F.424, R.504, K.545
- Ligands: NCR.14
21 PLIP interactions:21 interactions with chain G- Hydrophobic interactions: G:L.171, G:W.413, G:I.414
- Hydrogen bonds: G:S.101, G:S.101, G:I.102, G:G.103, G:R.104, G:N.105, G:N.105, G:D.170, G:D.170, G:S.175, G:N.179, G:V.185, G:V.185, G:V.262, G:R.504, G:R.504, G:K.545
- pi-Stacking: G:F.424
FAD.15: 30 residues within 4Å:- Chain H: W.98, P.99, I.100, S.101, I.102, G.103, R.104, N.105, S.106, P.169, D.170, L.171, G.174, S.175, G.178, N.179, E.182, G.184, V.185, Y.187, G.260, I.261, V.262, W.413, I.414, H.422, F.424, R.504, K.545
- Ligands: NCR.16
22 PLIP interactions:22 interactions with chain H- Hydrophobic interactions: H:L.171, H:W.413, H:I.414
- Hydrogen bonds: H:S.101, H:S.101, H:I.102, H:G.103, H:R.104, H:N.105, H:N.105, H:D.170, H:S.175, H:N.179, H:E.182, H:V.185, H:V.185, H:Y.187, H:V.262, H:R.504, H:R.504, H:K.545
- pi-Stacking: H:F.424
- 8 x NCR: 2-NITRO-P-CRESOL(Non-covalent)
NCR.2: 11 residues within 4Å:- Chain A: Y.108, D.170, V.185, Y.187, F.424, T.459, H.466, I.468, Y.503, R.504
- Ligands: FAD.1
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:Y.108, A:F.424, A:I.468
- Hydrogen bonds: A:Y.503, A:R.504
- pi-Stacking: A:F.424
NCR.4: 11 residues within 4Å:- Chain B: Y.108, D.170, V.185, Y.187, F.424, T.459, H.466, I.468, Y.503, R.504
- Ligands: FAD.3
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:Y.108, B:F.424, B:I.468
- Hydrogen bonds: B:Y.108, B:Y.503, B:Y.503, B:R.504
- pi-Stacking: B:F.424
NCR.6: 11 residues within 4Å:- Chain C: Y.108, D.170, V.185, Y.187, F.424, T.459, H.466, I.468, Y.503, R.504
- Ligands: FAD.5
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:Y.108, C:F.424, C:I.468
- Hydrogen bonds: C:Y.503, C:R.504
- pi-Stacking: C:F.424
NCR.8: 11 residues within 4Å:- Chain D: Y.108, D.170, V.185, Y.187, F.424, T.459, H.466, I.468, Y.503, R.504
- Ligands: FAD.7
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:Y.108, D:F.424, D:I.468
- Hydrogen bonds: D:Y.108, D:Y.503, D:Y.503, D:R.504
- pi-Stacking: D:F.424
NCR.10: 11 residues within 4Å:- Chain E: Y.108, D.170, V.185, Y.187, F.424, T.459, H.466, I.468, Y.503, R.504
- Ligands: FAD.9
6 PLIP interactions:6 interactions with chain E- Hydrophobic interactions: E:Y.108, E:F.424, E:I.468
- Hydrogen bonds: E:Y.503, E:R.504
- pi-Stacking: E:F.424
NCR.12: 11 residues within 4Å:- Chain F: Y.108, D.170, V.185, Y.187, F.424, T.459, H.466, I.468, Y.503, R.504
- Ligands: FAD.11
8 PLIP interactions:8 interactions with chain F- Hydrophobic interactions: F:Y.108, F:F.424, F:I.468
- Hydrogen bonds: F:Y.108, F:Y.503, F:Y.503, F:R.504
- pi-Stacking: F:F.424
NCR.14: 11 residues within 4Å:- Chain G: Y.108, D.170, V.185, Y.187, F.424, T.459, H.466, I.468, Y.503, R.504
- Ligands: FAD.13
6 PLIP interactions:6 interactions with chain G- Hydrophobic interactions: G:Y.108, G:F.424, G:I.468
- Hydrogen bonds: G:Y.503, G:R.504
- pi-Stacking: G:F.424
NCR.16: 11 residues within 4Å:- Chain H: Y.108, D.170, V.185, Y.187, F.424, T.459, H.466, I.468, Y.503, R.504
- Ligands: FAD.15
8 PLIP interactions:8 interactions with chain H- Hydrophobic interactions: H:Y.108, H:F.424, H:I.468
- Hydrogen bonds: H:Y.108, H:Y.503, H:Y.503, H:R.504
- pi-Stacking: H:F.424
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mattevi, A. et al., Crystal structures and inhibitor binding in the octameric flavoenzyme vanillyl-alcohol oxidase: the shape of the active-site cavity controls substrate specificity. Structure (1997)
- Release Date
- 1997-10-15
- Peptides
- VANILLYL-ALCOHOL OXIDASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)
- 8 x NCR: 2-NITRO-P-CRESOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mattevi, A. et al., Crystal structures and inhibitor binding in the octameric flavoenzyme vanillyl-alcohol oxidase: the shape of the active-site cavity controls substrate specificity. Structure (1997)
- Release Date
- 1997-10-15
- Peptides
- VANILLYL-ALCOHOL OXIDASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B