- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.16 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 6 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)(Covalent)
- 2 x U10: UBIQUINONE-10(Non-covalent)
U10.3: 14 residues within 4Å:- Chain C: I.15, S.18, L.19, L.22, I.28, S.36, A.39, L.198, L.201, H.202, S.206, F.221, D.229
- Ligands: HEM.2
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:I.15, C:L.19, C:A.39
- Hydrogen bonds: C:S.206
- pi-Stacking: C:F.221
U10.11: 14 residues within 4Å:- Chain M: I.15, S.18, L.19, L.22, I.28, S.36, A.39, L.198, L.201, H.202, S.206, F.221, D.229
- Ligands: HEM.10
5 PLIP interactions:5 interactions with chain M- Hydrophobic interactions: M:I.15, M:L.19, M:A.39
- Hydrogen bonds: M:S.206
- pi-Stacking: M:F.221
- 4 x PEE: 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
PEE.4: 14 residues within 4Å:- Chain C: W.31, F.96, L.97, I.99, Y.105, F.277, T.317, Q.323, F.326, W.327, Y.359
- Chain F: Y.29, N.69
- Chain G: V.48
13 PLIP interactions:11 interactions with chain C, 2 interactions with chain F- Hydrophobic interactions: C:W.31, C:W.31, C:F.96, C:F.96, C:F.96, C:L.97, C:I.99, C:F.277, C:F.326
- Hydrogen bonds: C:Y.105, C:Q.323, F:Y.29, F:N.69
PEE.8: 18 residues within 4Å:- Chain A: F.442
- Chain C: I.230, T.234
- Chain D: L.215, V.219, K.226
- Chain E: Y.37, T.40, T.44, V.47
- Chain J: F.14, A.21, I.24, V.25, A.28, L.29, E.32
- Ligands: BOG.5
15 PLIP interactions:2 interactions with chain C, 5 interactions with chain J, 5 interactions with chain E, 3 interactions with chain D- Hydrophobic interactions: C:I.230, C:T.234, J:A.21, J:V.25, J:A.28, J:L.29, J:E.32, E:T.44, E:V.47, E:V.47, D:L.215, D:V.219
- Hydrogen bonds: E:Y.37, E:T.40
- Salt bridges: D:K.226
PEE.12: 14 residues within 4Å:- Chain M: W.31, F.96, L.97, I.99, Y.105, F.277, T.317, Q.323, F.326, W.327, Y.359
- Chain P: Y.29, N.69
- Chain Q: V.48
12 PLIP interactions:11 interactions with chain M, 1 interactions with chain P- Hydrophobic interactions: M:W.31, M:W.31, M:F.96, M:F.96, M:F.96, M:L.97, M:I.99, M:F.277, M:F.326
- Hydrogen bonds: M:Y.105, M:Q.323, P:N.69
PEE.16: 18 residues within 4Å:- Chain K: F.442
- Chain M: I.230, T.234
- Chain N: L.215, V.219, K.226
- Chain O: Y.37, T.40, T.44, V.47
- Chain T: F.14, A.21, I.24, V.25, A.28, L.29, E.32
- Ligands: BOG.13
16 PLIP interactions:3 interactions with chain N, 5 interactions with chain T, 2 interactions with chain M, 6 interactions with chain O- Hydrophobic interactions: N:L.215, N:V.219, T:A.21, T:V.25, T:A.28, T:L.29, T:E.32, M:I.230, M:T.234, O:T.44, O:V.47, O:V.47
- Salt bridges: N:K.226
- Hydrogen bonds: O:Y.37, O:T.40, O:T.40
- 2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
BOG.5: 13 residues within 4Å:- Chain C: Y.76
- Chain D: H.200, R.203, M.204, K.207, M.208, M.211
- Chain E: Y.49, A.50, N.53, Q.57
- Chain J: D.40
- Ligands: PEE.8
8 PLIP interactions:1 interactions with chain D, 4 interactions with chain E, 1 interactions with chain J, 2 interactions with chain C- Salt bridges: D:K.207
- Hydrophobic interactions: E:Y.49, E:A.50
- Hydrogen bonds: E:N.53, E:Q.57, J:D.40, C:Y.76, C:Y.76
BOG.13: 13 residues within 4Å:- Chain M: Y.76
- Chain N: H.200, R.203, M.204, K.207, M.208, M.211
- Chain O: Y.49, A.50, N.53, Q.57
- Chain T: D.40
- Ligands: PEE.16
7 PLIP interactions:1 interactions with chain M, 1 interactions with chain N, 4 interactions with chain O, 1 interactions with chain T- Hydrogen bonds: M:Y.76, O:N.53, O:Q.57, T:D.40
- Salt bridges: N:K.207
- Hydrophobic interactions: O:Y.49, O:A.50
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.7: 8 residues within 4Å:- Chain E: C.139, H.141, L.142, C.144, C.158, C.160, H.161, S.163
4 PLIP interactions:4 interactions with chain E,- Metal complexes: E:C.139, E:H.141, E:C.158, E:H.161
FES.15: 8 residues within 4Å:- Chain O: C.139, H.141, L.142, C.144, C.158, C.160, H.161, S.163
4 PLIP interactions:4 interactions with chain O,- Metal complexes: O:C.139, O:H.141, O:C.158, O:H.161
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Z. et al., Electron transfer by domain movement in cytochrome bc1. Nature (1998)
- Release Date
- 1998-08-19
- Peptides
- UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: AK
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: BL
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: CM
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: DN
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: EO
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: FP
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: GQ
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: HR
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: IS
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: JT - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AK
AB
BL
BC
CM
CD
DN
DE
EO
EF
FP
FG
GQ
GH
HR
HI
IS
IJ
JT
J - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.16 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 6 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)(Covalent)
- 2 x U10: UBIQUINONE-10(Non-covalent)
- 4 x PEE: 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
- 2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Z. et al., Electron transfer by domain movement in cytochrome bc1. Nature (1998)
- Release Date
- 1998-08-19
- Peptides
- UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: AK
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: BL
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: CM
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: DN
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: EO
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: FP
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: GQ
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: HR
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: IS
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: JT - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AK
AB
BL
BC
CM
CD
DN
DE
EO
EF
FP
FG
GQ
GH
HR
HI
IS
IJ
JT
J - Membrane
-
We predict this structure to be a membrane protein.