SMTL ID : 9fia.1

SSU(body) structure derived from the SSU sample of the mitoribosome from T. gondii.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-3-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x UNK- UNK- UNK- UNK- UNK- UNK- UNK- UNK: unidentified peptide(Non-covalent)

UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1: 2 residues within 4Å: Chain 8: W.393, R.532 1 PLIP interactions: 1 interactions with chain 8 Hydrogen bonds: 8:R.532

1 x U- U- U- U- U- U- U- U: ulr11(Non-covalent)

U-U-U-U-U-U-U-U.2: 17 residues within 4Å: Chain 3: R.340, R.345 Chain A: R.546, F.550, R.554 Chain P: K.270, I.273 Chain U: Y.428 Chain Z: R.596 Ligands: U-U-U-U-U-U.7, U-U-U-U-U-U.7, U-U-U-U-U-U.7, U-U-U-U-U-U.7 Chain g: R.580, L.584 Chain s: G.2, A.27 Protein-ligand interaction information (PLIP) not available

1 x U- U- U- U- U: ulr12(Non-covalent)

U-U-U-U-U.3: 12 residues within 4Å: Chain 3: R.340, K.342, P.343, R.344 Chain M: N.151, R.152 Chain Z: D.585, R.592, H.594 Ligands: U-U-U-U.4 Chain g: R.588, K.591 Protein-ligand interaction information (PLIP) not available

1 x U- U- U- U: ulr13(Non-covalent)

U-U-U-U.4: 16 residues within 4Å: Chain 3: R.344, R.354 Chain M: R.152, W.155, R.156, M.159 Chain Z: F.590, K.593, H.594 Ligands: U-U-U-U-U.3, U-U.5, U-U-U.6, U-U-U.6 Chain p: U.32, A.33, U.34 Protein-ligand interaction information (PLIP) not available

1 x U- U: ulr14(Non-covalent)

U-U.5: 9 residues within 4Å: Chain Z: H.594, T.595, K.601, H.602 Ligands: U-U-U-U.4, U-U-U.6 Chain o: A.65 Chain s: G.2, A.3 Protein-ligand interaction information (PLIP) not available

1 x U- U- U: ulr15(Non-covalent)

U-U-U.6: 13 residues within 4Å: Chain M: R.170, R.171 Ligands: U-U-U-U.4, U-U.5, U-U.5 Chain o: U.55, U.56 Chain p: U.31, U.32, A.33, U.34, A.35 Chain s: G.2 Protein-ligand interaction information (PLIP) not available

1 x U- U- U- U- U- U: ulr20(Non-covalent)

U-U-U-U-U-U.7: 26 residues within 4Å: Chain A: E.486, R.538, S.539, R.542, R.546, R.553 Chain P: T.46, A.47, N.48, N.50, D.56, G.57, S.58, T.59, R.60 Ligands: U-U-U-U-U-U-U-U.2, U-U-U-U-U-U-U-U.2, U-U-U-U-U-U-U-U.2, U-U-U-U-U-U-U-U.2 Chain g: F.548, R.549, T.552, W.553, R.554, H.574, T.575 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rocha, R.E.O. et al., SSU (body) structure derived from the SSU sample of the mitoribosome from T. gondii. To Be Published (2024)

Release Date

2024-12-11

Peptides

Mitochondrial ribosomal protein, mS145: A
unidentified peptide: B
Ribosomal protein S18, putative: C
Mitochondrial ribosomal protein, mS23: D
CHCH domain-containing protein: E
Ribosomal protein S11, putative: F
Putative mitochondrial ribosomal protein s6-2: G
unidentified peptide: H
unidentified peptide: Ie
DnaJ domain-containing protein: J
Mitochondrial ribosomal protein, mS137: K
RAP domain-containing protein: L
Mitochondrial ribosomal protein, mS47: M
Pentatricopeptide repeat domain-containing protein: N
Mitochondrial ribosomal protein, mS140: O
Mitochondrial ribosomal protein, mS147: P
Ribosomal protein, uS2m: Q
Putative ribosomal protein S8: R
unidentified peptide: SW5
unidentified peptide: T
Mitochondrial ribosomal protein, mS26: U
Putative ribosomal protein S17: V
Putative 30S ribosomal protein S15: X
unidentified peptide: Y
Macro domain-containing protein: Z
Ribosomal protein, bS21m: 0
Mitochondrial ribosomal protein, mS156: 1
unidentified peptide: 2
Putative homeodomain containing protein: 3
Mitochondrial ribosomal protein, mS144: 4
unidentified peptide: 6
unidentified peptide: 7
Enoyl-CoA hydratase/isomerase family protein: 8
unidentified peptide: 9
unidentified peptide: a
Ribosomal protein, uS2m: b
Putative 30S ribosomal protein S16: c
Mitochondrial ribosomal protein, mS153: d
Mitochondrial ribosomal protein, mS26: f
30S ribosomal protein S12, putative: g
30S ribosomal protein S5, putative: h
Acylphosphatase-like domain-containing protein: i

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B0

B
B1

C
B2

D
B3

E
B4

F
B5

G
B6

H
B7

I
B8

e
Bj

J
B9

K
BA

L
BB

M
BC

N
BD

O
BE

P
BF

Q
BG

R
BH

S
BI

W
BN

5
BX

T
BJ

U
BK

V
BL

X
BO

Y
BP

Z
BQ

0
BS

1
BT

2
BU

3
BV

4
BW

6
BY

7
Ba

8
Bc

9
Bd

a
Be

b
Bg

c
Bh

d
Bi

f
Bk

g
Bl

h
HJ

i
HS

Mitochondrial ribosomal protein, mS145

unidentified peptide

Ribosomal protein S18, putative

Mitochondrial ribosomal protein, mS23

CHCH domain-containing protein

Ribosomal protein S11, putative

Putative mitochondrial ribosomal protein s6-2

unidentified peptide

unidentified peptide

DnaJ domain-containing protein

Mitochondrial ribosomal protein, mS137

RAP domain-containing protein

Mitochondrial ribosomal protein, mS47

Pentatricopeptide repeat domain-containing protein

Mitochondrial ribosomal protein, mS140

Mitochondrial ribosomal protein, mS147

Ribosomal protein, uS2m

Putative ribosomal protein S8

unidentified peptide

unidentified peptide

Mitochondrial ribosomal protein, mS26

Putative ribosomal protein S17

Putative 30S ribosomal protein S15

unidentified peptide

Macro domain-containing protein

Ribosomal protein, bS21m

Mitochondrial ribosomal protein, mS156

unidentified peptide

Putative homeodomain containing protein

Mitochondrial ribosomal protein, mS144

unidentified peptide

unidentified peptide

Enoyl-CoA hydratase/isomerase family protein

unidentified peptide

unidentified peptide

Ribosomal protein, uS2m

Putative 30S ribosomal protein S16

Mitochondrial ribosomal protein, mS153

Mitochondrial ribosomal protein, mS26

30S ribosomal protein S12, putative

30S ribosomal protein S5, putative

Acylphosphatase-like domain-containing protein

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