- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x MAN: alpha-D-mannopyranose(Non-covalent)
MAN.2: 3 residues within 4Å:- Chain B: P.309, T.310
- Ligands: NAG-NAG-BMA-MAN-MAN-MAN.1
No protein-ligand interaction detected (PLIP)MAN.8: 3 residues within 4Å:- Chain D: P.309, T.310
- Ligands: NAG-NAG-BMA-MAN-MAN-MAN.7
No protein-ligand interaction detected (PLIP)MAN.14: 3 residues within 4Å:- Chain A: P.309, T.310
- Ligands: NAG-NAG-BMA-MAN-MAN-MAN.13
No protein-ligand interaction detected (PLIP)MAN.20: 3 residues within 4Å:- Chain C: P.309, T.310
- Ligands: NAG-NAG-BMA-MAN-MAN-MAN.19
No protein-ligand interaction detected (PLIP)- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.3: 4 residues within 4Å:- Chain A: D.2, F.3, N.5, N.154
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:F.3
- Water bridges: A:N.5, A:N.5
NAG.4: 2 residues within 4Å:- Chain A: N.65, W.357
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.65, A:W.357
NAG.9: 4 residues within 4Å:- Chain B: D.2, F.3, N.5, N.154
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:F.3
- Water bridges: B:N.5, B:N.5
NAG.10: 2 residues within 4Å:- Chain B: N.65, W.357
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.65, B:W.357
NAG.15: 4 residues within 4Å:- Chain C: D.2, F.3, N.5, N.154
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:F.3
- Water bridges: C:N.5, C:N.5
NAG.16: 2 residues within 4Å:- Chain C: N.65, W.357
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.65, C:W.357
NAG.21: 4 residues within 4Å:- Chain D: D.2, F.3, N.5, N.154
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:F.3
- Water bridges: D:N.5, D:N.5
NAG.22: 2 residues within 4Å:- Chain D: N.65, W.357
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.65, D:W.357
- 4 x CA: CALCIUM ION(Non-covalent)
CA.5: 4 residues within 4Å:- Chain A: D.213, G.217, D.244, N.266
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.213, A:G.217, A:D.244, A:N.266, H2O.1, H2O.4
CA.11: 4 residues within 4Å:- Chain B: D.213, G.217, D.244, N.266
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.213, B:G.217, B:D.244, B:N.266, H2O.8, H2O.11
CA.17: 4 residues within 4Å:- Chain C: D.213, G.217, D.244, N.266
6 PLIP interactions:4 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.213, C:G.217, C:D.244, C:N.266, H2O.15, H2O.19
CA.23: 4 residues within 4Å:- Chain D: D.213, G.217, D.244, N.266
6 PLIP interactions:4 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.213, D:G.217, D:D.244, D:N.266, H2O.23, H2O.26
- 4 x DPC: 5-ACETYLAMINO-4-AMINO-6-(PHENETHYL-PROPYL-CARBAMOYL)-5,6-DIHYDRO-4H-PYRAN-2-CARBOXYLIC ACID(Non-covalent)
DPC.6: 15 residues within 4Å:- Chain A: R.37, E.38, D.70, R.71, N.141, I.142, R.144, G.164, A.166, E.196, E.197, R.212, N.214, R.290, Y.324
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:I.142, A:I.142, A:A.166, A:E.196, A:N.214
- Hydrogen bonds: A:E.38, A:R.71
- Water bridges: A:R.37, A:D.70, A:D.70, A:R.71, A:R.212, A:R.212
- Salt bridges: A:R.37, A:R.212, A:R.290
DPC.12: 15 residues within 4Å:- Chain B: R.37, E.38, D.70, R.71, N.141, I.142, R.144, G.164, A.166, E.196, E.197, R.212, N.214, R.290, Y.324
16 PLIP interactions:16 interactions with chain B- Hydrophobic interactions: B:I.142, B:I.142, B:A.166, B:E.196, B:N.214
- Hydrogen bonds: B:E.38, B:R.71
- Water bridges: B:R.37, B:D.70, B:D.70, B:R.71, B:R.212, B:R.212
- Salt bridges: B:R.37, B:R.212, B:R.290
DPC.18: 15 residues within 4Å:- Chain C: R.37, E.38, D.70, R.71, N.141, I.142, R.144, G.164, A.166, E.196, E.197, R.212, N.214, R.290, Y.324
16 PLIP interactions:16 interactions with chain C- Hydrophobic interactions: C:I.142, C:I.142, C:A.166, C:E.196, C:N.214
- Hydrogen bonds: C:E.38, C:R.71
- Water bridges: C:R.37, C:D.70, C:D.70, C:R.71, C:R.212, C:R.212
- Salt bridges: C:R.37, C:R.212, C:R.290
DPC.24: 15 residues within 4Å:- Chain D: R.37, E.38, D.70, R.71, N.141, I.142, R.144, G.164, A.166, E.196, E.197, R.212, N.214, R.290, Y.324
16 PLIP interactions:16 interactions with chain D- Hydrophobic interactions: D:I.142, D:I.142, D:A.166, D:E.196, D:N.214
- Hydrogen bonds: D:E.38, D:R.71
- Water bridges: D:R.37, D:D.70, D:D.70, D:R.71, D:R.212, D:R.212
- Salt bridges: D:R.37, D:R.212, D:R.290
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Taylor, N.R. et al., Dihydropyrancarboxamides related to zanamivir: a new series of inhibitors of influenza virus sialidases. 2. Crystallographic and molecular modeling study of complexes of 4-amino-4H-pyran-6-carboxamides and sialidase from influenza virus types A and B. J.Med.Chem. (1998)
- Release Date
- 1998-06-03
- Peptides
- NEURAMINIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x MAN: alpha-D-mannopyranose(Non-covalent)
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x DPC: 5-ACETYLAMINO-4-AMINO-6-(PHENETHYL-PROPYL-CARBAMOYL)-5,6-DIHYDRO-4H-PYRAN-2-CARBOXYLIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Taylor, N.R. et al., Dihydropyrancarboxamides related to zanamivir: a new series of inhibitors of influenza virus sialidases. 2. Crystallographic and molecular modeling study of complexes of 4-amino-4H-pyran-6-carboxamides and sialidase from influenza virus types A and B. J.Med.Chem. (1998)
- Release Date
- 1998-06-03
- Peptides
- NEURAMINIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A