- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose(Non-covalent)
- 8 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
SIA.2: 13 residues within 4Å:- Chain A: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, R.212, R.290, Y.324
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:W.98, A:I.142, A:R.144
- Hydrogen bonds: A:E.38, A:D.70, A:R.71, A:R.144, A:E.197, A:R.212, A:R.212
- Water bridges: A:R.75, A:E.197, A:E.197, A:E.197, A:E.197
- Salt bridges: A:R.37, A:R.212, A:R.290
SIA.3: 9 residues within 4Å:- Chain A: S.286, A.288, S.289, S.291, N.318, T.319, D.320, W.321, K.352
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:W.321
- Hydrogen bonds: A:S.286, A:S.289, A:S.291, A:S.291, A:N.318, A:N.318, A:K.352
- Water bridges: A:I.287
SIA.16: 13 residues within 4Å:- Chain B: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, R.212, R.290, Y.324
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:W.98, B:I.142, B:R.144
- Hydrogen bonds: B:E.38, B:D.70, B:R.71, B:R.144, B:E.197, B:R.212, B:R.212
- Water bridges: B:R.75, B:E.197, B:E.197, B:E.197, B:E.197
- Salt bridges: B:R.37, B:R.212, B:R.290
SIA.17: 9 residues within 4Å:- Chain B: S.286, A.288, S.289, S.291, N.318, T.319, D.320, W.321, K.352
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:W.321
- Hydrogen bonds: B:S.286, B:S.289, B:S.291, B:S.291, B:N.318, B:N.318, B:K.352
- Water bridges: B:I.287
SIA.30: 13 residues within 4Å:- Chain C: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, R.212, R.290, Y.324
18 PLIP interactions:18 interactions with chain C- Hydrophobic interactions: C:W.98, C:I.142, C:R.144
- Hydrogen bonds: C:E.38, C:D.70, C:R.71, C:R.144, C:E.197, C:R.212, C:R.212
- Water bridges: C:R.75, C:E.197, C:E.197, C:E.197, C:E.197
- Salt bridges: C:R.37, C:R.212, C:R.290
SIA.31: 9 residues within 4Å:- Chain C: S.286, A.288, S.289, S.291, N.318, T.319, D.320, W.321, K.352
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:W.321
- Hydrogen bonds: C:S.286, C:S.289, C:S.291, C:S.291, C:N.318, C:N.318, C:K.352
- Water bridges: C:I.287
SIA.44: 13 residues within 4Å:- Chain D: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, R.212, R.290, Y.324
18 PLIP interactions:18 interactions with chain D- Hydrophobic interactions: D:W.98, D:I.142, D:R.144
- Hydrogen bonds: D:E.38, D:D.70, D:R.71, D:R.144, D:E.197, D:R.212, D:R.212
- Water bridges: D:R.75, D:E.197, D:E.197, D:E.197, D:E.197
- Salt bridges: D:R.37, D:R.212, D:R.290
SIA.45: 9 residues within 4Å:- Chain D: S.286, A.288, S.289, S.291, N.318, T.319, D.320, W.321, K.352
9 PLIP interactions:9 interactions with chain D- Hydrophobic interactions: D:W.321
- Hydrogen bonds: D:S.286, D:S.289, D:S.291, D:S.291, D:N.318, D:N.318, D:K.352
- Water bridges: D:I.287
- 20 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
NAG.4: 6 residues within 4Å:- Chain A: N.119, N.120
- Chain B: L.373, G.374, Q.375
- Ligands: NAG.5
Ligand excluded by PLIPNAG.5: 7 residues within 4Å:- Chain B: Q.311, G.312, F.372, Q.375
- Ligands: NAG.4, BMA.6, BMA.10
Ligand excluded by PLIPNAG.11: 5 residues within 4Å:- Chain A: D.2, F.3, N.5, N.154
- Ligands: NAG.12
Ligand excluded by PLIPNAG.12: 2 residues within 4Å:- Chain A: D.2
- Ligands: NAG.11
Ligand excluded by PLIPNAG.13: 2 residues within 4Å:- Chain A: N.65, W.357
Ligand excluded by PLIPNAG.18: 6 residues within 4Å:- Chain B: N.119, N.120
- Chain D: L.373, G.374, Q.375
- Ligands: NAG.19
Ligand excluded by PLIPNAG.19: 7 residues within 4Å:- Chain D: Q.311, G.312, F.372, Q.375
- Ligands: NAG.18, BMA.20, BMA.24
Ligand excluded by PLIPNAG.25: 5 residues within 4Å:- Chain B: D.2, F.3, N.5, N.154
- Ligands: NAG.26
Ligand excluded by PLIPNAG.26: 2 residues within 4Å:- Chain B: D.2
- Ligands: NAG.25
Ligand excluded by PLIPNAG.27: 2 residues within 4Å:- Chain B: N.65, W.357
Ligand excluded by PLIPNAG.32: 6 residues within 4Å:- Chain A: L.373, G.374, Q.375
- Chain C: N.119, N.120
- Ligands: NAG.33
Ligand excluded by PLIPNAG.33: 7 residues within 4Å:- Chain A: Q.311, G.312, F.372, Q.375
- Ligands: NAG.32, BMA.34, BMA.38
Ligand excluded by PLIPNAG.39: 5 residues within 4Å:- Chain C: D.2, F.3, N.5, N.154
- Ligands: NAG.40
Ligand excluded by PLIPNAG.40: 2 residues within 4Å:- Chain C: D.2
- Ligands: NAG.39
Ligand excluded by PLIPNAG.41: 2 residues within 4Å:- Chain C: N.65, W.357
Ligand excluded by PLIPNAG.46: 6 residues within 4Å:- Chain C: L.373, G.374, Q.375
- Chain D: N.119, N.120
- Ligands: NAG.47
Ligand excluded by PLIPNAG.47: 7 residues within 4Å:- Chain C: Q.311, G.312, F.372, Q.375
- Ligands: NAG.46, BMA.48, BMA.52
Ligand excluded by PLIPNAG.53: 5 residues within 4Å:- Chain D: D.2, F.3, N.5, N.154
- Ligands: NAG.54
Ligand excluded by PLIPNAG.54: 2 residues within 4Å:- Chain D: D.2
- Ligands: NAG.53
Ligand excluded by PLIPNAG.55: 2 residues within 4Å:- Chain D: N.65, W.357
Ligand excluded by PLIP- 20 x BMA: beta-D-mannopyranose(Non-covalent)(Non-functional Binders)
BMA.6: 8 residues within 4Å:- Chain B: L.296, P.309, T.310, Q.311, G.312
- Ligands: MAN-MAN.1, NAG.5, BMA.8
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.310
- Water bridges: B:E.294
BMA.7: 9 residues within 4Å:- Chain B: R.247, N.249, D.250, R.283, I.285, I.287, E.294
- Ligands: MAN-MAN.1, MAN-MAN.1
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.247, B:R.247, B:D.250, B:I.285
BMA.8: 5 residues within 4Å:- Chain B: P.309, T.310
- Ligands: BMA.6, BMA.9, BMA.10
No protein-ligand interaction detected (PLIP)BMA.9: 1 residues within 4Å:- Ligands: BMA.8
No protein-ligand interaction detected (PLIP)BMA.10: 2 residues within 4Å:- Ligands: NAG.5, BMA.8
No protein-ligand interaction detected (PLIP)BMA.20: 8 residues within 4Å:- Chain D: L.296, P.309, T.310, Q.311, G.312
- Ligands: MAN-MAN.15, NAG.19, BMA.22
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:T.310
- Water bridges: D:E.294
BMA.21: 9 residues within 4Å:- Chain D: R.247, N.249, D.250, R.283, I.285, I.287, E.294
- Ligands: MAN-MAN.15, MAN-MAN.15
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:R.247, D:R.247, D:D.250, D:I.285
BMA.22: 5 residues within 4Å:- Chain D: P.309, T.310
- Ligands: BMA.20, BMA.23, BMA.24
No protein-ligand interaction detected (PLIP)BMA.23: 1 residues within 4Å:- Ligands: BMA.22
No protein-ligand interaction detected (PLIP)BMA.24: 2 residues within 4Å:- Ligands: NAG.19, BMA.22
No protein-ligand interaction detected (PLIP)BMA.34: 8 residues within 4Å:- Chain A: L.296, P.309, T.310, Q.311, G.312
- Ligands: MAN-MAN.29, NAG.33, BMA.36
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.310
- Water bridges: A:E.294
BMA.35: 9 residues within 4Å:- Chain A: R.247, N.249, D.250, R.283, I.285, I.287, E.294
- Ligands: MAN-MAN.29, MAN-MAN.29
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.247, A:R.247, A:D.250, A:I.285
BMA.36: 5 residues within 4Å:- Chain A: P.309, T.310
- Ligands: BMA.34, BMA.37, BMA.38
No protein-ligand interaction detected (PLIP)BMA.37: 1 residues within 4Å:- Ligands: BMA.36
No protein-ligand interaction detected (PLIP)BMA.38: 2 residues within 4Å:- Ligands: NAG.33, BMA.36
No protein-ligand interaction detected (PLIP)BMA.48: 8 residues within 4Å:- Chain C: L.296, P.309, T.310, Q.311, G.312
- Ligands: MAN-MAN.43, NAG.47, BMA.50
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:T.310
- Water bridges: C:E.294
BMA.49: 9 residues within 4Å:- Chain C: R.247, N.249, D.250, R.283, I.285, I.287, E.294
- Ligands: MAN-MAN.43, MAN-MAN.43
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.247, C:R.247, C:D.250, C:I.285
BMA.50: 5 residues within 4Å:- Chain C: P.309, T.310
- Ligands: BMA.48, BMA.51, BMA.52
No protein-ligand interaction detected (PLIP)BMA.51: 1 residues within 4Å:- Ligands: BMA.50
No protein-ligand interaction detected (PLIP)BMA.52: 2 residues within 4Å:- Ligands: NAG.47, BMA.50
No protein-ligand interaction detected (PLIP)- 4 x CA: CALCIUM ION(Non-covalent)
CA.14: 5 residues within 4Å:- Chain A: D.213, G.217, D.244, N.266, G.267
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.213, A:G.217, A:D.244, H2O.6, H2O.6
CA.28: 5 residues within 4Å:- Chain B: D.213, G.217, D.244, N.266, G.267
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.213, B:G.217, B:D.244, H2O.15, H2O.15
CA.42: 5 residues within 4Å:- Chain C: D.213, G.217, D.244, N.266, G.267
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.213, C:G.217, C:D.244, H2O.24, H2O.24
CA.56: 5 residues within 4Å:- Chain D: D.213, G.217, D.244, N.266, G.267
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.213, D:G.217, D:D.244, H2O.33, H2O.33
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rudino-Pinera, E. et al., The Crystal Structure of Influenza Type a Virus Neuraminidase of the N6 Subtype at 1.85 A Resolution. To be Published
- Release Date
- 2007-03-27
- Peptides
- NEURAMINIDASE SUBTYPE N9: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose(Non-covalent)
- 8 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
- 20 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
- 20 x BMA: beta-D-mannopyranose(Non-covalent)(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rudino-Pinera, E. et al., The Crystal Structure of Influenza Type a Virus Neuraminidase of the N6 Subtype at 1.85 A Resolution. To be Published
- Release Date
- 2007-03-27
- Peptides
- NEURAMINIDASE SUBTYPE N9: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A