- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
NAG.2: 5 residues within 4Å:- Chain A: D.2, F.3, N.5, N.154
- Ligands: NAG.3
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:D.2
- Hydrogen bonds: A:D.2, A:F.3, A:N.5
- Water bridges: A:D.2, A:N.154
NAG.3: 2 residues within 4Å:- Chain A: D.2
- Ligands: NAG.2
1 PLIP interactions:1 interactions with chain A- Water bridges: A:N.154
NAG.4: 2 residues within 4Å:- Chain A: N.65, W.357
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.65, A:W.357
NAG.10: 5 residues within 4Å:- Chain B: D.2, F.3, N.5, N.154
- Ligands: NAG.11
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:D.2
- Hydrogen bonds: B:D.2, B:F.3, B:N.5
- Water bridges: B:D.2, B:N.154
NAG.11: 2 residues within 4Å:- Chain B: D.2
- Ligands: NAG.10
1 PLIP interactions:1 interactions with chain B- Water bridges: B:N.154
NAG.12: 2 residues within 4Å:- Chain B: N.65, W.357
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.65, B:W.357
NAG.18: 5 residues within 4Å:- Chain C: D.2, F.3, N.5, N.154
- Ligands: NAG.19
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:D.2
- Hydrogen bonds: C:D.2, C:F.3, C:N.5
- Water bridges: C:D.2, C:N.154
NAG.19: 2 residues within 4Å:- Chain C: D.2
- Ligands: NAG.18
1 PLIP interactions:1 interactions with chain C- Water bridges: C:N.154
NAG.20: 2 residues within 4Å:- Chain C: N.65, W.357
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.65, C:W.357
NAG.26: 5 residues within 4Å:- Chain D: D.2, F.3, N.5, N.154
- Ligands: NAG.27
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:D.2
- Hydrogen bonds: D:D.2, D:F.3, D:N.5
- Water bridges: D:D.2, D:N.154
NAG.27: 2 residues within 4Å:- Chain D: D.2
- Ligands: NAG.26
1 PLIP interactions:1 interactions with chain D- Water bridges: D:N.154
NAG.28: 2 residues within 4Å:- Chain D: N.65, W.357
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.65, D:W.357
- 8 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
SIA.5: 13 residues within 4Å:- Chain A: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, R.212, R.290, Y.324
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:W.98, A:I.142, A:R.144
- Hydrogen bonds: A:E.38, A:D.70, A:R.71, A:R.144, A:E.197, A:R.212, A:R.212
- Water bridges: A:R.37, A:E.147, A:E.197, A:E.197
- Salt bridges: A:R.37, A:R.212, A:R.290
SIA.6: 9 residues within 4Å:- Chain A: S.286, A.288, S.289, S.291, N.318, T.319, D.320, W.321, K.352
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:W.321
- Hydrogen bonds: A:S.289, A:S.291, A:S.291, A:N.318, A:N.318, A:K.352
- Water bridges: A:I.287, A:A.288
SIA.13: 13 residues within 4Å:- Chain B: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, R.212, R.290, Y.324
17 PLIP interactions:17 interactions with chain B- Hydrophobic interactions: B:W.98, B:I.142, B:R.144
- Hydrogen bonds: B:E.38, B:D.70, B:R.71, B:R.144, B:E.197, B:R.212, B:R.212
- Water bridges: B:R.37, B:E.147, B:E.197, B:E.197
- Salt bridges: B:R.37, B:R.212, B:R.290
SIA.14: 9 residues within 4Å:- Chain B: S.286, A.288, S.289, S.291, N.318, T.319, D.320, W.321, K.352
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:W.321
- Hydrogen bonds: B:S.289, B:S.291, B:S.291, B:N.318, B:N.318, B:K.352
- Water bridges: B:I.287, B:A.288
SIA.21: 13 residues within 4Å:- Chain C: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, R.212, R.290, Y.324
17 PLIP interactions:17 interactions with chain C- Hydrophobic interactions: C:W.98, C:I.142, C:R.144
- Hydrogen bonds: C:E.38, C:D.70, C:R.71, C:R.144, C:E.197, C:R.212, C:R.212
- Water bridges: C:R.37, C:E.147, C:E.197, C:E.197
- Salt bridges: C:R.37, C:R.212, C:R.290
SIA.22: 9 residues within 4Å:- Chain C: S.286, A.288, S.289, S.291, N.318, T.319, D.320, W.321, K.352
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:W.321
- Hydrogen bonds: C:S.289, C:S.291, C:S.291, C:N.318, C:N.318, C:K.352
- Water bridges: C:I.287, C:A.288
SIA.29: 13 residues within 4Å:- Chain D: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, R.212, R.290, Y.324
17 PLIP interactions:17 interactions with chain D- Hydrophobic interactions: D:W.98, D:I.142, D:R.144
- Hydrogen bonds: D:E.38, D:D.70, D:R.71, D:R.144, D:E.197, D:R.212, D:R.212
- Water bridges: D:R.37, D:E.147, D:E.197, D:E.197
- Salt bridges: D:R.37, D:R.212, D:R.290
SIA.30: 9 residues within 4Å:- Chain D: S.286, A.288, S.289, S.291, N.318, T.319, D.320, W.321, K.352
9 PLIP interactions:9 interactions with chain D- Hydrophobic interactions: D:W.321
- Hydrogen bonds: D:S.289, D:S.291, D:S.291, D:N.318, D:N.318, D:K.352
- Water bridges: D:I.287, D:A.288
- 8 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.7: 6 residues within 4Å:- Chain A: D.213, N.214, G.217, D.244, N.266, G.267
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.213, A:G.217, A:D.244, H2O.1, H2O.4
CA.8: 3 residues within 4Å:- Ligands: CA.16, CA.24, CA.32
No protein-ligand interaction detected (PLIP)CA.15: 6 residues within 4Å:- Chain B: D.213, N.214, G.217, D.244, N.266, G.267
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.213, B:G.217, B:D.244, H2O.16, H2O.19
CA.16: 3 residues within 4Å:- Ligands: CA.8, CA.24, CA.32
No protein-ligand interaction detected (PLIP)CA.23: 6 residues within 4Å:- Chain C: D.213, N.214, G.217, D.244, N.266, G.267
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.213, C:G.217, C:D.244, H2O.31, H2O.34
CA.24: 3 residues within 4Å:- Ligands: CA.8, CA.16, CA.32
No protein-ligand interaction detected (PLIP)CA.31: 6 residues within 4Å:- Chain D: D.213, N.214, G.217, D.244, N.266, G.267
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.213, D:G.217, D:D.244, H2O.46, H2O.50
CA.32: 3 residues within 4Å:- Ligands: CA.8, CA.16, CA.24
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Varghese, J.N. et al., Structural evidence for a second sialic acid binding site in avian influenza virus neuraminidases. Proc.Natl.Acad.Sci.USA (1997)
- Release Date
- 1998-03-04
- Peptides
- NEURAMINIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
- 8 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
- 8 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Varghese, J.N. et al., Structural evidence for a second sialic acid binding site in avian influenza virus neuraminidases. Proc.Natl.Acad.Sci.USA (1997)
- Release Date
- 1998-03-04
- Peptides
- NEURAMINIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A