SMTL ID : 1bm6.1

SOLUTION STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN STROMELYSIN-1 COMPLEXED TO A POTENT NON-PEPTIDIC INHIBITOR, NMR, 20 STRUCTURES

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.119, H.123, H.129, M.137 Ligands: HAV.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.119, A:H.123, A:H.129, HAV.5 ZN.2: 5 residues within 4Å: Chain A: H.69, Y.73, F.75, H.84, H.97 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.69, A:H.84, A:H.97

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 8 residues within 4Å: Chain A: D.76, G.77, P.78, G.79, V.81, L.82, D.99, E.102 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.76, A:G.79, A:V.81, A:D.99, A:E.102 CA.4: 8 residues within 4Å: Chain A: A.58, D.59, M.61, G.91, I.92, N.93, G.94, D.95 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.59, A:G.91, A:N.93, A:G.94, A:D.95

1 x HAV: HYDROXYAMINOVALINE(Non-covalent)

HAV.5: 11 residues within 4Å: Chain A: V.81, L.82, A.83, H.84, A.85, H.119, E.120, H.123 Ligands: ZN.1, 3MP.6, MSB.7 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.81, A:H.84 Hydrogen bonds: A:L.82, A:A.83

1 x 3MP: 3-METHYLPYRIDINE(Non-covalent)

3MP.6: 5 residues within 4Å: Chain A: N.80, V.81, L.82 Ligands: HAV.5, MSB.7 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.80

1 x MSB: 1-METHYLOXY-4-SULFONE-BENZENE(Non-covalent)

MSB.7: 14 residues within 4Å: Chain A: N.80, V.81, L.82, A.83, L.115, V.116, H.119, L.136, M.137, Y.138, P.139, L.140 Ligands: HAV.5, 3MP.6 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.82, A:V.116, A:H.119, A:L.140, A:L.140, A:L.140 Hydrogen bonds: A:H.119, A:L.140 pi-Cation interactions: A:H.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y.C. et al., Solution structure of the catalytic domain of human stromelysin-1 complexed to a potent, nonpeptidic inhibitor. Biochemistry (1998)

Release Date

1999-07-29

Peptides

STROMELYSIN-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

STROMELYSIN-1

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