SMTL ID : 1c3i.1 (1 other biounit)

HUMAN STROMELYSIN-1 CATALYTIC DOMAIN COMPLEXED WITH RO-26-2812

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.119, H.123, H.129 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.119, A:H.123, A:H.129 ZN.2: 4 residues within 4Å: Chain A: H.69, D.71, H.84, H.97 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.69, A:D.71, A:H.84, A:H.97 ZN.6: 4 residues within 4Å: Chain B: H.119, H.123, H.129 Ligands: TR1.11 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.119, B:H.123, B:H.129 ZN.7: 5 residues within 4Å: Chain B: H.69, D.71, H.84, Y.86, H.97 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.69, B:D.71, B:H.84, B:H.97

6 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain A: D.25, D.100, E.102 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.25, A:D.100, A:D.100, H2O.1, H2O.1 CA.4: 5 residues within 4Å: Chain A: D.59, G.91, I.92, N.93, D.95 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.59, A:G.91, A:N.93, A:D.95, H2O.1, H2O.1 CA.5: 7 residues within 4Å: Chain A: D.76, G.77, P.78, G.79, V.81, D.99, E.102 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.76, A:G.77, A:G.79, A:V.81, A:D.99, A:E.102 CA.8: 3 residues within 4Å: Chain B: D.25, D.100, E.102 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.25, B:D.100, B:D.100, H2O.6, H2O.6 CA.9: 5 residues within 4Å: Chain B: A.58, D.59, G.91, N.93, D.95 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.59, B:G.91, B:N.93, B:D.95, H2O.6, H2O.6 CA.10: 6 residues within 4Å: Chain B: D.76, G.77, G.79, V.81, D.99, E.102 6 PLIP interactions: 6 interactions with chain B Metal complexes: B:D.76, B:G.77, B:G.79, B:V.81, B:D.99, B:E.102

1 x TR1: 2-(2-{2-[(BIPHENYL-4-YLMETHYL)-AMINO]-3-MERCAPTO-PENTANOYLAMINO}-ACETYLAMINO)-3-METHYL-BUTYRIC ACID METHYL ESTER(Non-covalent)

TR1.11: 17 residues within 4Å: Chain B: N.80, V.81, L.82, A.83, L.115, V.116, H.119, E.120, H.123, H.129, A.135, L.136, Y.138, P.139, L.140, Y.141 Ligands: ZN.6 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.82, B:V.116, B:H.119, B:Y.141 Hydrogen bonds: B:N.80, B:L.82, B:A.83, B:P.139, B:Y.141 pi-Stacking: B:H.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Steele, D.L. et al., Expression, characterization and structure determination of an active site mutant (Glu202-Gln) of mini-stromelysin-1. Protein Eng. (2000)

Release Date

2000-07-26

Peptides

STROMELYSIN-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

STROMELYSIN-1

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