SMTL ID : 1d8f.2 (1 other biounit)

CRYSTAL STRUCTURE OF MMP3 COMPLEXED WITH A PIPERAZINE BASED INHIBITOR.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.119, H.123, H.129 Ligands: SPI.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.119, A:H.123, A:H.129 ZN.2: 5 residues within 4Å: Chain A: H.69, D.71, H.84, Y.86, H.97 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.69, A:D.71, A:H.84, A:H.97

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: D.76, G.77, G.79, V.81, D.99, E.102 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.76, A:G.77, A:G.79, A:V.81, A:D.99, A:E.102 CA.4: 4 residues within 4Å: Chain A: T.23, D.25, D.100, E.102 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.25, A:D.25, A:D.100, A:D.100, A:E.102 CA.5: 5 residues within 4Å: Chain A: A.58, D.59, G.91, N.93, D.95 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.59, A:G.91, A:N.93, A:D.95, H2O.1

1 x SPI: N-HYDROXY-1-(4-METHOXYPHENYL)SULFONYL-4-BENZYLOXYCARBONYL-PIPERAZINE-2-CARBOXAMIDE(Non-covalent)

SPI.6: 14 residues within 4Å: Chain A: N.80, V.81, L.82, A.83, L.115, V.116, H.119, E.120, H.123, H.129, P.139, L.140, Y.141 Ligands: ZN.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.116, A:H.119, A:Y.141 Hydrogen bonds: A:L.82, A:A.83, A:A.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, M. et al., Design and synthesis of piperazine-based matrix metalloproteinase inhibitors. J.Med.Chem. (2000)

Release Date

2000-10-23

Peptides

STROMELYSIN-1 PRECURSOR: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

STROMELYSIN-1 PRECURSOR

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