SMTL ID : 1hy7.2 (3 other biounits)

A CARBOXYLIC ACID BASED INHIBITOR IN COMPLEX WITH MMP3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.119, H.123, H.129 Ligands: MBS.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.119, A:H.123, A:H.129 ZN.2: 4 residues within 4Å: Chain A: H.69, D.71, H.84, H.97 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.69, A:D.71, A:H.84, A:H.97

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: D.76, G.77, G.79, V.81, D.99, E.102 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.76, A:G.77, A:G.79, A:V.81, A:D.99, A:E.102 CA.4: 3 residues within 4Å: Chain A: D.25, D.100, E.102 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.25, A:D.100, A:D.100, H2O.1, H2O.1 CA.5: 4 residues within 4Å: Chain A: D.59, G.91, N.93, D.95 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.59, A:G.91, A:N.93, A:D.95, H2O.1, H2O.2

1 x MBS: R-2-{[4'-METHOXY-(1,1'-BIPHENYL)-4-YL]-SULFONYL}-AMINO-6-METHOXY-HEX-4-YNOIC ACID(Non-covalent)

MBS.6: 18 residues within 4Å: Chain A: Y.73, V.81, L.82, A.83, H.84, A.85, L.115, H.119, E.120, H.123, H.129, A.135, L.136, Y.138, P.139, L.140, Y.141 Ligands: ZN.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:H.84, A:H.119, A:Y.141 Hydrogen bonds: A:A.83, A:A.83 Water bridges: A:A.85 Salt bridges: A:H.119, A:H.123, A:H.129 pi-Stacking: A:H.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Natchus, M.G. et al., Development of new carboxylic acid-based MMP inhibitors derived from functionalized propargylglycines. J.Med.Chem. (2001)

Release Date

2002-01-18

Peptides

STROMELYSIN-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

STROMELYSIN-1

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