SMTL ID : 1dae.1

DETHIOBIOTIN SYNTHETASE COMPLEXED WITH 3-(1-AMINOETHYL) NONANEDIOIC ACID

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x IKT: 3-(1-AMINOETHYL)NONANEDIOIC ACID(Non-covalent)

IKT.1: 13 residues within 4Å: Chain A: K.37, A.40, S.41, P.79, T.80, S.81, A.117, G.118 Chain B: G.150, C.151, I.152, N.153, Y.187 13 PLIP interactions: 9 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:P.79 Hydrogen bonds: A:S.41, A:S.41, A:G.118, B:G.150, B:I.152, B:N.153, B:Y.187 Salt bridges: A:K.37 Water bridges: A:T.11, A:K.37, A:N.52, A:T.122 IKT.2: 13 residues within 4Å: Chain A: G.150, C.151, I.152, N.153, Y.187 Chain B: K.37, A.40, S.41, P.79, T.80, S.81, A.117, G.118 13 PLIP interactions: 3 interactions with chain A, 10 interactions with chain B Hydrogen bonds: A:G.150, A:I.152, A:N.153, B:S.41, B:S.41, B:G.118 Hydrophobic interactions: B:P.79 Salt bridges: B:K.37 Water bridges: B:T.11, B:K.37, B:N.52, B:D.54, B:T.122

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Huang, W. et al., Mechanism of an ATP-dependent carboxylase, dethiobiotin synthetase, based on crystallographic studies of complexes with substrates and a reaction intermediate. Biochemistry (1995)

Peptides

DETHIOBIOTIN SYNTHETASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

DETHIOBIOTIN SYNTHETASE

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