- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- hetero-oligomer
- Ligands
- 18 x SO4: SULFATE ION(Non-functional Binders)
- 6 x FE: FE (III) ION(Non-covalent)
FE.4: 4 residues within 4Å:- Chain A: N.201, H.208, H.213, D.362
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.208, A:H.213, A:D.362, A:D.362, H2O.430
FE.10: 4 residues within 4Å:- Chain C: N.201, H.208, H.213, D.362
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:H.208, C:H.213, C:D.362, C:D.362, H2O.1042
FE.16: 4 residues within 4Å:- Chain E: N.201, H.208, H.213, D.362
5 PLIP interactions:4 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:H.208, E:H.213, E:D.362, E:D.362, H2O.1654
FE.22: 4 residues within 4Å:- Chain G: N.201, H.208, H.213, D.362
5 PLIP interactions:4 interactions with chain G, 1 Ligand-Water interactions- Metal complexes: G:H.208, G:H.213, G:D.362, G:D.362, H2O.2266
FE.28: 4 residues within 4Å:- Chain I: N.201, H.208, H.213, D.362
5 PLIP interactions:4 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:H.208, I:H.213, I:D.362, I:D.362, H2O.2878
FE.34: 4 residues within 4Å:- Chain K: N.201, H.208, H.213, D.362
5 PLIP interactions:4 interactions with chain K, 1 Ligand-Water interactions- Metal complexes: K:H.208, K:H.213, K:D.362, K:D.362, H2O.3490
- 6 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.5: 10 residues within 4Å:- Chain A: C.81, H.83, R.84, G.85, K.86, C.101, Y.103, H.104, G.105, W.106
4 PLIP interactions:4 interactions with chain A,- Metal complexes: A:C.81, A:H.83, A:C.101, A:H.104
FES.11: 10 residues within 4Å:- Chain C: C.81, H.83, R.84, G.85, K.86, C.101, Y.103, H.104, G.105, W.106
4 PLIP interactions:4 interactions with chain C,- Metal complexes: C:C.81, C:H.83, C:C.101, C:H.104
FES.17: 10 residues within 4Å:- Chain E: C.81, H.83, R.84, G.85, K.86, C.101, Y.103, H.104, G.105, W.106
4 PLIP interactions:4 interactions with chain E,- Metal complexes: E:C.81, E:H.83, E:C.101, E:H.104
FES.23: 10 residues within 4Å:- Chain G: C.81, H.83, R.84, G.85, K.86, C.101, Y.103, H.104, G.105, W.106
4 PLIP interactions:4 interactions with chain G,- Metal complexes: G:C.81, G:H.83, G:C.101, G:H.104
FES.29: 10 residues within 4Å:- Chain I: C.81, H.83, R.84, G.85, K.86, C.101, Y.103, H.104, G.105, W.106
4 PLIP interactions:4 interactions with chain I,- Metal complexes: I:C.81, I:H.83, I:C.101, I:H.104
FES.35: 10 residues within 4Å:- Chain K: C.81, H.83, R.84, G.85, K.86, C.101, Y.103, H.104, G.105, W.106
4 PLIP interactions:4 interactions with chain K,- Metal complexes: K:C.81, K:H.83, K:C.101, K:H.104
- 6 x IND: INDOLE(Non-covalent)
IND.6: 7 residues within 4Å:- Chain A: N.201, D.205, H.208, V.209, H.295, N.297, L.307
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:V.209, A:N.297, A:L.307
- Hydrogen bonds: A:N.297
- pi-Stacking: A:H.208
IND.12: 7 residues within 4Å:- Chain C: N.201, D.205, H.208, V.209, H.295, N.297, L.307
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:V.209, C:N.297, C:L.307
- Hydrogen bonds: C:N.297
- pi-Stacking: C:H.208
IND.18: 7 residues within 4Å:- Chain E: N.201, D.205, H.208, V.209, H.295, N.297, L.307
5 PLIP interactions:5 interactions with chain E- Hydrophobic interactions: E:V.209, E:N.297, E:L.307
- Hydrogen bonds: E:N.297
- pi-Stacking: E:H.208
IND.24: 7 residues within 4Å:- Chain G: N.201, D.205, H.208, V.209, H.295, N.297, L.307
5 PLIP interactions:5 interactions with chain G- Hydrophobic interactions: G:V.209, G:N.297, G:L.307
- Hydrogen bonds: G:N.297
- pi-Stacking: G:H.208
IND.30: 7 residues within 4Å:- Chain I: N.201, D.205, H.208, V.209, H.295, N.297, L.307
5 PLIP interactions:5 interactions with chain I- Hydrophobic interactions: I:V.209, I:N.297, I:L.307
- Hydrogen bonds: I:N.297
- pi-Stacking: I:H.208
IND.36: 7 residues within 4Å:- Chain K: N.201, D.205, H.208, V.209, H.295, N.297, L.307
5 PLIP interactions:5 interactions with chain K- Hydrophobic interactions: K:V.209, K:N.297, K:L.307
- Hydrogen bonds: K:N.297
- pi-Stacking: K:H.208
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
-
Carredano, E. et al., Substrate binding site of naphthalene 1,2-dioxygenase: functional implications of indole binding. J.Mol.Biol. (2000)
- Release Date
- 2000-05-24
- Peptides
- PROTEIN (NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT): ACEGIK
PROTEIN (NAPHTHALENE 1,2-DIOXYGENASE BETA SUBUNIT): BDFHJL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AI
AK
AB
BD
BF
BH
BJ
BL
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- hetero-oligomer
- Ligands
- 18 x SO4: SULFATE ION(Non-functional Binders)
- 6 x FE: FE (III) ION(Non-covalent)
- 6 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 6 x IND: INDOLE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
-
Carredano, E. et al., Substrate binding site of naphthalene 1,2-dioxygenase: functional implications of indole binding. J.Mol.Biol. (2000)
- Release Date
- 2000-05-24
- Peptides
- PROTEIN (NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT): ACEGIK
PROTEIN (NAPHTHALENE 1,2-DIOXYGENASE BETA SUBUNIT): BDFHJL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AI
AK
AB
BD
BF
BH
BJ
BL
B