- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 4 residues within 4Å:- Chain A: L.128, N.129, K.130, K.131
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:K.130, A:K.131
- Water bridges: A:L.128, A:L.128, A:N.129
- Salt bridges: A:K.130
SO4.9: 3 residues within 4Å:- Chain A: K.245, W.439, H.440
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:W.439
- Water bridges: A:W.439
- Salt bridges: A:K.245
SO4.13: 2 residues within 4Å:- Chain B: Q.63, Q.65
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.63, B:Q.65, B:Q.65
SO4.14: 6 residues within 4Å:- Chain B: G.59, S.60, E.61, G.166, E.167, K.172
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:S.60, B:E.167, B:E.167
- Water bridges: B:V.58, B:G.166, B:E.167, B:E.167
- Salt bridges: B:K.172
SO4.18: 4 residues within 4Å:- Chain C: L.128, N.129, K.130, K.131
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:K.130, C:K.131
- Water bridges: C:L.128, C:L.128, C:N.129
- Salt bridges: C:K.130
SO4.24: 3 residues within 4Å:- Chain C: K.245, W.439, H.440
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:W.439
- Water bridges: C:W.439
- Salt bridges: C:K.245
SO4.28: 2 residues within 4Å:- Chain D: Q.63, Q.65
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:Q.63, D:Q.65, D:Q.65
SO4.29: 6 residues within 4Å:- Chain D: G.59, S.60, E.61, G.166, E.167, K.172
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:S.60, D:E.167, D:E.167
- Water bridges: D:V.58, D:G.166, D:E.167, D:E.167
- Salt bridges: D:K.172
SO4.33: 4 residues within 4Å:- Chain E: L.128, N.129, K.130, K.131
6 PLIP interactions:6 interactions with chain E- Hydrogen bonds: E:K.130, E:K.131
- Water bridges: E:L.128, E:L.128, E:N.129
- Salt bridges: E:K.130
SO4.39: 3 residues within 4Å:- Chain E: K.245, W.439, H.440
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:W.439
- Water bridges: E:W.439
- Salt bridges: E:K.245
SO4.43: 2 residues within 4Å:- Chain F: Q.63, Q.65
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:Q.63, F:Q.65, F:Q.65
SO4.44: 6 residues within 4Å:- Chain F: G.59, S.60, E.61, G.166, E.167, K.172
8 PLIP interactions:8 interactions with chain F- Hydrogen bonds: F:S.60, F:E.167, F:E.167
- Water bridges: F:V.58, F:G.166, F:E.167, F:E.167
- Salt bridges: F:K.172
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.4: 9 residues within 4Å:- Chain A: C.81, H.83, R.84, G.85, C.101, Y.103, H.104, G.105, W.106
4 PLIP interactions:4 interactions with chain A,- Metal complexes: A:C.81, A:H.83, A:C.101, A:H.104
FES.19: 9 residues within 4Å:- Chain C: C.81, H.83, R.84, G.85, C.101, Y.103, H.104, G.105, W.106
4 PLIP interactions:4 interactions with chain C,- Metal complexes: C:C.81, C:H.83, C:C.101, C:H.104
FES.34: 9 residues within 4Å:- Chain E: C.81, H.83, R.84, G.85, C.101, Y.103, H.104, G.105, W.106
4 PLIP interactions:4 interactions with chain E,- Metal complexes: E:C.81, E:H.83, E:C.101, E:H.104
- 3 x FE: FE (III) ION(Non-covalent)
FE.5: 4 residues within 4Å:- Chain A: N.201, H.208, H.213, D.362
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.208, A:H.213, A:D.362, A:D.362, H2O.16
FE.20: 4 residues within 4Å:- Chain C: N.201, H.208, H.213, D.362
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:H.208, C:H.213, C:D.362, C:D.362, H2O.56
FE.35: 4 residues within 4Å:- Chain E: N.201, H.208, H.213, D.362
5 PLIP interactions:4 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:H.208, E:H.213, E:D.362, E:D.362, H2O.96
- 3 x UNU: BENZAMIDE(Non-covalent)
UNU.6: 6 residues within 4Å:- Chain A: N.201, F.202, D.205, H.208, H.295, N.297
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:N.297
- Hydrogen bonds: A:N.201, A:N.297
UNU.21: 6 residues within 4Å:- Chain C: N.201, F.202, D.205, H.208, H.295, N.297
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:N.297
- Hydrogen bonds: C:N.201, C:N.297
UNU.36: 6 residues within 4Å:- Chain E: N.201, F.202, D.205, H.208, H.295, N.297
3 PLIP interactions:3 interactions with chain E- Hydrophobic interactions: E:N.297
- Hydrogen bonds: E:N.201, E:N.297
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferraro, D.J. et al., Naphthalene 1,2-Dioxygenase bound to benzamide. TO BE PUBLISHED
- Release Date
- 2013-10-30
- Peptides
- Naphthalene 1,2-dioxygenase subunit alpha: ACE
Naphthalene 1,2-dioxygenase subunit beta: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 3 x FE: FE (III) ION(Non-covalent)
- 3 x UNU: BENZAMIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferraro, D.J. et al., Naphthalene 1,2-Dioxygenase bound to benzamide. TO BE PUBLISHED
- Release Date
- 2013-10-30
- Peptides
- Naphthalene 1,2-dioxygenase subunit alpha: ACE
Naphthalene 1,2-dioxygenase subunit beta: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B