- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x FE: FE (III) ION(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 4 residues within 4Å:- Chain A: L.128, N.129, K.130, K.131
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.130, A:K.131
- Water bridges: A:E.126, A:K.130
- Salt bridges: A:K.130
SO4.3: 3 residues within 4Å:- Chain A: K.245, W.439, H.440
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:W.439
- Water bridges: A:Y.394, A:W.439
- Salt bridges: A:K.245
SO4.16: 2 residues within 4Å:- Chain B: Q.63, Q.65
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Q.63, B:Q.65
- Water bridges: B:Q.65, B:N.89
SO4.17: 6 residues within 4Å:- Chain B: G.59, S.60, E.61, G.166, E.167, K.172
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.60, B:E.167, B:E.167
- Water bridges: B:K.172
- Salt bridges: B:K.172
SO4.24: 4 residues within 4Å:- Chain C: L.128, N.129, K.130, K.131
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:K.130, C:K.131
- Water bridges: C:E.126, C:K.130
- Salt bridges: C:K.130
SO4.25: 3 residues within 4Å:- Chain C: K.245, W.439, H.440
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:W.439
- Water bridges: C:Y.394, C:W.439
- Salt bridges: C:K.245
SO4.38: 2 residues within 4Å:- Chain D: Q.63, Q.65
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:Q.63, D:Q.65
- Water bridges: D:Q.65, D:N.89
SO4.39: 6 residues within 4Å:- Chain D: G.59, S.60, E.61, G.166, E.167, K.172
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:S.60, D:E.167, D:E.167
- Water bridges: D:K.172
- Salt bridges: D:K.172
SO4.46: 4 residues within 4Å:- Chain E: L.128, N.129, K.130, K.131
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:K.130, E:K.131
- Water bridges: E:E.126, E:K.130
- Salt bridges: E:K.130
SO4.47: 3 residues within 4Å:- Chain E: K.245, W.439, H.440
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:W.439
- Water bridges: E:Y.394, E:W.439
- Salt bridges: E:K.245
SO4.60: 2 residues within 4Å:- Chain F: Q.63, Q.65
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:Q.63, F:Q.65
- Water bridges: F:Q.65, F:N.89
SO4.61: 6 residues within 4Å:- Chain F: G.59, S.60, E.61, G.166, E.167, K.172
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:S.60, F:E.167, F:E.167
- Water bridges: F:K.172
- Salt bridges: F:K.172
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.4: 9 residues within 4Å:- Chain A: C.81, H.83, R.84, G.85, C.101, Y.103, H.104, G.105, W.106
4 PLIP interactions:4 interactions with chain A,- Metal complexes: A:C.81, A:H.83, A:C.101, A:H.104
FES.26: 9 residues within 4Å:- Chain C: C.81, H.83, R.84, G.85, C.101, Y.103, H.104, G.105, W.106
4 PLIP interactions:4 interactions with chain C,- Metal complexes: C:C.81, C:H.83, C:C.101, C:H.104
FES.48: 9 residues within 4Å:- Chain E: C.81, H.83, R.84, G.85, C.101, Y.103, H.104, G.105, W.106
4 PLIP interactions:4 interactions with chain E,- Metal complexes: E:C.81, E:H.83, E:C.101, E:H.104
- 48 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 10 residues within 4Å:- Chain A: L.31, F.35, A.36, M.59, G.60, I.61, D.62, F.152
- Chain C: Y.376, Q.377
Ligand excluded by PLIPEDO.6: 7 residues within 4Å:- Chain A: H.18, S.381, D.382, L.383
- Chain E: V.80, C.81, R.82
Ligand excluded by PLIPEDO.7: 2 residues within 4Å:- Chain A: E.137, A.139
Ligand excluded by PLIPEDO.8: 7 residues within 4Å:- Chain A: P.49, A.50, D.53
- Chain B: R.78, Y.79, K.80, L.81
Ligand excluded by PLIPEDO.9: 2 residues within 4Å:- Chain A: P.118, F.119
Ligand excluded by PLIPEDO.10: 2 residues within 4Å:- Chain A: Q.377
- Chain E: K.136
Ligand excluded by PLIPEDO.11: 5 residues within 4Å:- Chain A: W.168, D.396, A.397, V.398, P.400
Ligand excluded by PLIPEDO.12: 5 residues within 4Å:- Chain A: V.183, R.342, A.345, D.346
- Chain B: N.82
Ligand excluded by PLIPEDO.13: 5 residues within 4Å:- Chain A: H.208, H.213, W.358, D.362
- Ligands: FE.1
Ligand excluded by PLIPEDO.14: 7 residues within 4Å:- Chain A: V.55, T.56, E.92, P.186, K.188, W.327, Y.329
Ligand excluded by PLIPEDO.15: 5 residues within 4Å:- Chain A: V.9, S.10, E.11, Q.421, E.442
Ligand excluded by PLIPEDO.18: 2 residues within 4Å:- Chain B: N.91, Q.94
Ligand excluded by PLIPEDO.19: 6 residues within 4Å:- Chain B: R.138, A.158, E.160, F.177, V.178, D.179
Ligand excluded by PLIPEDO.20: 3 residues within 4Å:- Chain B: E.83, A.84, N.86
Ligand excluded by PLIPEDO.21: 6 residues within 4Å:- Chain B: Y.50, Y.88, Q.102, M.191, V.192, F.193
Ligand excluded by PLIPEDO.22: 5 residues within 4Å:- Chain B: K.9, L.10, V.11, S.12
- Chain D: K.113
Ligand excluded by PLIPEDO.27: 10 residues within 4Å:- Chain C: L.31, F.35, A.36, M.59, G.60, I.61, D.62, F.152
- Chain E: Y.376, Q.377
Ligand excluded by PLIPEDO.28: 7 residues within 4Å:- Chain A: V.80, C.81, R.82
- Chain C: H.18, S.381, D.382, L.383
Ligand excluded by PLIPEDO.29: 2 residues within 4Å:- Chain C: E.137, A.139
Ligand excluded by PLIPEDO.30: 7 residues within 4Å:- Chain C: P.49, A.50, D.53
- Chain D: R.78, Y.79, K.80, L.81
Ligand excluded by PLIPEDO.31: 2 residues within 4Å:- Chain C: P.118, F.119
Ligand excluded by PLIPEDO.32: 2 residues within 4Å:- Chain A: K.136
- Chain C: Q.377
Ligand excluded by PLIPEDO.33: 5 residues within 4Å:- Chain C: W.168, D.396, A.397, V.398, P.400
Ligand excluded by PLIPEDO.34: 5 residues within 4Å:- Chain C: V.183, R.342, A.345, D.346
- Chain D: N.82
Ligand excluded by PLIPEDO.35: 5 residues within 4Å:- Chain C: H.208, H.213, W.358, D.362
- Ligands: FE.23
Ligand excluded by PLIPEDO.36: 7 residues within 4Å:- Chain C: V.55, T.56, E.92, P.186, K.188, W.327, Y.329
Ligand excluded by PLIPEDO.37: 5 residues within 4Å:- Chain C: V.9, S.10, E.11, Q.421, E.442
Ligand excluded by PLIPEDO.40: 2 residues within 4Å:- Chain D: N.91, Q.94
Ligand excluded by PLIPEDO.41: 6 residues within 4Å:- Chain D: R.138, A.158, E.160, F.177, V.178, D.179
Ligand excluded by PLIPEDO.42: 3 residues within 4Å:- Chain D: E.83, A.84, N.86
Ligand excluded by PLIPEDO.43: 6 residues within 4Å:- Chain D: Y.50, Y.88, Q.102, M.191, V.192, F.193
Ligand excluded by PLIPEDO.44: 5 residues within 4Å:- Chain D: K.9, L.10, V.11, S.12
- Chain F: K.113
Ligand excluded by PLIPEDO.49: 10 residues within 4Å:- Chain A: Y.376, Q.377
- Chain E: L.31, F.35, A.36, M.59, G.60, I.61, D.62, F.152
Ligand excluded by PLIPEDO.50: 7 residues within 4Å:- Chain C: V.80, C.81, R.82
- Chain E: H.18, S.381, D.382, L.383
Ligand excluded by PLIPEDO.51: 2 residues within 4Å:- Chain E: E.137, A.139
Ligand excluded by PLIPEDO.52: 7 residues within 4Å:- Chain E: P.49, A.50, D.53
- Chain F: R.78, Y.79, K.80, L.81
Ligand excluded by PLIPEDO.53: 2 residues within 4Å:- Chain E: P.118, F.119
Ligand excluded by PLIPEDO.54: 2 residues within 4Å:- Chain C: K.136
- Chain E: Q.377
Ligand excluded by PLIPEDO.55: 5 residues within 4Å:- Chain E: W.168, D.396, A.397, V.398, P.400
Ligand excluded by PLIPEDO.56: 5 residues within 4Å:- Chain E: V.183, R.342, A.345, D.346
- Chain F: N.82
Ligand excluded by PLIPEDO.57: 5 residues within 4Å:- Chain E: H.208, H.213, W.358, D.362
- Ligands: FE.45
Ligand excluded by PLIPEDO.58: 7 residues within 4Å:- Chain E: V.55, T.56, E.92, P.186, K.188, W.327, Y.329
Ligand excluded by PLIPEDO.59: 5 residues within 4Å:- Chain E: V.9, S.10, E.11, Q.421, E.442
Ligand excluded by PLIPEDO.62: 2 residues within 4Å:- Chain F: N.91, Q.94
Ligand excluded by PLIPEDO.63: 6 residues within 4Å:- Chain F: R.138, A.158, E.160, F.177, V.178, D.179
Ligand excluded by PLIPEDO.64: 3 residues within 4Å:- Chain F: E.83, A.84, N.86
Ligand excluded by PLIPEDO.65: 6 residues within 4Å:- Chain F: Y.50, Y.88, Q.102, M.191, V.192, F.193
Ligand excluded by PLIPEDO.66: 5 residues within 4Å:- Chain B: K.113
- Chain F: K.9, L.10, V.11, S.12
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferraro, D.J. et al., Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase. J.Bacteriol. (2006)
- Release Date
- 2006-10-10
- Peptides
- Naphthalene 1,2-dioxygenase alpha subunit: ACE
Naphthalene 1,2-dioxygenase beta subunit: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x FE: FE (III) ION(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 48 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferraro, D.J. et al., Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase. J.Bacteriol. (2006)
- Release Date
- 2006-10-10
- Peptides
- Naphthalene 1,2-dioxygenase alpha subunit: ACE
Naphthalene 1,2-dioxygenase beta subunit: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B