SMTL ID : 1eo2.1

CRYSTAL STRUCTURE OF ACINETOBACTER SP. ADP1 PROTOCATECHUATE 3,4-DIOXYGENASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-12-12-mer

Ligands

12 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain B: Y.109, Y.148, H.161, H.163 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:Y.109, B:Y.148, B:H.161, B:H.163, H2O.3 FE.2: 4 residues within 4Å: Chain D: Y.109, Y.148, H.161, H.163 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:Y.109, D:Y.148, D:H.161, D:H.163, H2O.10 FE.3: 4 residues within 4Å: Chain F: Y.109, Y.148, H.161, H.163 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:Y.109, F:Y.148, F:H.161, F:H.163, H2O.17 FE.4: 4 residues within 4Å: Chain H: Y.109, Y.148, H.161, H.163 5 PLIP interactions: 4 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:Y.109, H:Y.148, H:H.161, H:H.163, H2O.24 FE.5: 4 residues within 4Å: Chain J: Y.109, Y.148, H.161, H.163 5 PLIP interactions: 4 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:Y.109, J:Y.148, J:H.161, J:H.163, H2O.31 FE.6: 4 residues within 4Å: Chain L: Y.109, Y.148, H.161, H.163 5 PLIP interactions: 4 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:Y.109, L:Y.148, L:H.161, L:H.163, H2O.38 FE.7: 4 residues within 4Å: Chain N: Y.109, Y.148, H.161, H.163 5 PLIP interactions: 4 interactions with chain N, 1 Ligand-Water interactions Metal complexes: N:Y.109, N:Y.148, N:H.161, N:H.163, H2O.45 FE.8: 4 residues within 4Å: Chain P: Y.109, Y.148, H.161, H.163 5 PLIP interactions: 4 interactions with chain P, 1 Ligand-Water interactions Metal complexes: P:Y.109, P:Y.148, P:H.161, P:H.163, H2O.52 FE.9: 4 residues within 4Å: Chain R: Y.109, Y.148, H.161, H.163 5 PLIP interactions: 4 interactions with chain R, 1 Ligand-Water interactions Metal complexes: R:Y.109, R:Y.148, R:H.161, R:H.163, H2O.59 FE.10: 4 residues within 4Å: Chain T: Y.109, Y.148, H.161, H.163 5 PLIP interactions: 4 interactions with chain T, 1 Ligand-Water interactions Metal complexes: T:Y.109, T:Y.148, T:H.161, T:H.163, H2O.66 FE.11: 4 residues within 4Å: Chain V: Y.109, Y.148, H.161, H.163 5 PLIP interactions: 4 interactions with chain V, 1 Ligand-Water interactions Metal complexes: V:Y.109, V:Y.148, V:H.161, V:H.163, H2O.73 FE.12: 4 residues within 4Å: Chain X: Y.109, Y.148, H.161, H.163 5 PLIP interactions: 4 interactions with chain X, 1 Ligand-Water interactions Metal complexes: X:Y.109, X:Y.148, X:H.161, X:H.163, H2O.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vetting, M.W. et al., Structure of Acinetobacter strain ADP1 protocatechuate 3, 4-dioxygenase at 2.2 A resolution: implications for the mechanism of an intradiol dioxygenase. Biochemistry (2000)

Release Date

2000-08-09

Peptides

PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE BETA CHAIN: BDFHJLNPRTVX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

I
A

K
A

M
A

O
A

Q
A

S
A

U
A

W
A

B
B

D
B

F
B

H
B

J
B

L
B

N
B

P
B

R
B

T
B

V
B

X
B

PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN

PROTOCATECHUATE 3,4-DIOXYGENASE BETA CHAIN

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