- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-oligomer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x DHB: 3,4-DIHYDROXYBENZOIC ACID(Non-covalent)
DHB.2: 14 residues within 4Å:- Chain A: T.16, G.18, P.19, R.142
- Chain B: Y.25, Y.109, Y.148, W.150, R.158, H.161, H.163, Q.178, I.192
- Ligands: FE.1
8 PLIP interactions:2 interactions with chain A, 6 interactions with chain B- Hydrophobic interactions: A:P.19, B:Y.148, B:W.150, B:R.158, B:I.192
- Water bridges: A:R.142
- Hydrogen bonds: B:R.158, B:Q.178
DHB.4: 14 residues within 4Å:- Chain C: T.16, G.18, P.19, R.142
- Chain D: Y.25, Y.109, Y.148, W.150, R.158, H.161, H.163, Q.178, I.192
- Ligands: FE.3
8 PLIP interactions:6 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:Y.148, D:W.150, D:R.158, D:I.192, C:P.19
- Hydrogen bonds: D:R.158, D:Q.178
- Water bridges: C:R.142
DHB.6: 14 residues within 4Å:- Chain E: T.16, G.18, P.19, R.142
- Chain F: Y.25, Y.109, Y.148, W.150, R.158, H.161, H.163, Q.178, I.192
- Ligands: FE.5
10 PLIP interactions:8 interactions with chain F, 2 interactions with chain E- Hydrophobic interactions: F:Y.148, F:W.150, F:R.158, F:I.192, E:P.19
- Hydrogen bonds: F:Y.25, F:R.158, F:Q.178
- Water bridges: F:T.27, E:R.142
DHB.8: 14 residues within 4Å:- Chain G: T.16, G.18, P.19, R.142
- Chain H: Y.25, Y.109, Y.148, W.150, R.158, H.161, H.163, Q.178, I.192
- Ligands: FE.7
10 PLIP interactions:8 interactions with chain H, 2 interactions with chain G- Hydrophobic interactions: H:Y.148, H:W.150, H:R.158, H:I.192, G:P.19
- Hydrogen bonds: H:Y.25, H:R.158, H:Q.178
- Water bridges: H:T.27, G:R.142
DHB.10: 14 residues within 4Å:- Chain I: T.16, G.18, P.19, R.142
- Chain J: Y.25, Y.109, Y.148, W.150, R.158, H.161, H.163, Q.178, I.192
- Ligands: FE.9
8 PLIP interactions:6 interactions with chain J, 2 interactions with chain I- Hydrophobic interactions: J:Y.148, J:W.150, J:R.158, J:I.192, I:P.19
- Hydrogen bonds: J:R.158, J:Q.178
- Water bridges: I:R.142
DHB.12: 14 residues within 4Å:- Chain K: T.16, G.18, P.19, R.142
- Chain L: Y.25, Y.109, Y.148, W.150, R.158, H.161, H.163, Q.178, I.192
- Ligands: FE.11
10 PLIP interactions:8 interactions with chain L, 2 interactions with chain K- Hydrophobic interactions: L:Y.148, L:W.150, L:R.158, L:I.192, K:P.19
- Hydrogen bonds: L:Y.25, L:R.158, L:Q.178
- Water bridges: L:T.27, K:R.142
DHB.14: 14 residues within 4Å:- Chain M: T.16, G.18, P.19, R.142
- Chain N: Y.25, Y.109, Y.148, W.150, R.158, H.161, H.163, Q.178, I.192
- Ligands: FE.13
8 PLIP interactions:6 interactions with chain N, 2 interactions with chain M- Hydrophobic interactions: N:Y.148, N:W.150, N:R.158, N:I.192, M:P.19
- Hydrogen bonds: N:R.158, N:Q.178
- Water bridges: M:R.142
DHB.16: 14 residues within 4Å:- Chain O: T.16, G.18, P.19, R.142
- Chain P: Y.25, Y.109, Y.148, W.150, R.158, H.161, H.163, Q.178, I.192
- Ligands: FE.15
13 PLIP interactions:11 interactions with chain P, 2 interactions with chain O- Hydrophobic interactions: P:Y.148, P:W.150, P:R.158, P:I.192, O:P.19
- Hydrogen bonds: P:Y.25, P:Y.109, P:R.158, P:H.161, P:Q.178, P:Q.178
- Water bridges: P:T.27, O:R.142
DHB.18: 14 residues within 4Å:- Chain Q: T.16, G.18, P.19, R.142
- Chain R: Y.25, Y.109, Y.148, W.150, R.158, H.161, H.163, Q.178, I.192
- Ligands: FE.17
9 PLIP interactions:7 interactions with chain R, 2 interactions with chain Q- Hydrophobic interactions: R:Y.148, R:W.150, R:R.158, R:I.192, Q:P.19
- Hydrogen bonds: R:R.158, R:Q.178
- Water bridges: R:T.27, Q:R.142
DHB.20: 14 residues within 4Å:- Chain S: T.16, G.18, P.19, R.142
- Chain T: Y.25, Y.109, Y.148, W.150, R.158, H.161, H.163, Q.178, I.192
- Ligands: FE.19
9 PLIP interactions:2 interactions with chain S, 7 interactions with chain T- Hydrophobic interactions: S:P.19, T:Y.148, T:W.150, T:R.158, T:I.192
- Water bridges: S:R.142
- Hydrogen bonds: T:Y.25, T:R.158, T:Q.178
DHB.22: 14 residues within 4Å:- Chain U: T.16, G.18, P.19, R.142
- Chain V: Y.25, Y.109, Y.148, W.150, R.158, H.161, H.163, Q.178, I.192
- Ligands: FE.21
9 PLIP interactions:7 interactions with chain V, 2 interactions with chain U- Hydrophobic interactions: V:Y.148, V:W.150, V:R.158, V:I.192, U:P.19
- Hydrogen bonds: V:Y.25, V:R.158, V:Q.178
- Water bridges: U:R.142
DHB.24: 14 residues within 4Å:- Chain W: T.16, G.18, P.19, R.142
- Chain X: Y.25, Y.109, Y.148, W.150, R.158, H.161, H.163, Q.178, I.192
- Ligands: FE.23
9 PLIP interactions:7 interactions with chain X, 2 interactions with chain W- Hydrophobic interactions: X:Y.148, X:W.150, X:R.158, X:I.192, W:P.19
- Hydrogen bonds: X:R.158, X:Q.178
- Water bridges: X:T.27, W:R.142
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vetting, M.W. et al., Structure of Acinetobacter strain ADP1 protocatechuate 3, 4-dioxygenase at 2.2 A resolution: implications for the mechanism of an intradiol dioxygenase. Biochemistry (2000)
- Release Date
- 2000-08-09
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE BETA CHAIN: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AI
AK
AM
AO
AQ
AS
AU
AW
AB
BD
BF
BH
BJ
BL
BN
BP
BR
BT
BV
BX
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-oligomer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x DHB: 3,4-DIHYDROXYBENZOIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vetting, M.W. et al., Structure of Acinetobacter strain ADP1 protocatechuate 3, 4-dioxygenase at 2.2 A resolution: implications for the mechanism of an intradiol dioxygenase. Biochemistry (2000)
- Release Date
- 2000-08-09
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE BETA CHAIN: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AI
AK
AM
AO
AQ
AS
AU
AW
AB
BD
BF
BH
BJ
BL
BN
BP
BR
BT
BV
BX
B