SMTL ID : 1f88.2 (2 other biounits)

CRYSTAL STRUCTURE OF BOVINE RHODOPSIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: T.4, N.15, G.18, V.20, R.21 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.21, A:R.21 NAG-NAG.2: 5 residues within 4Å: Chain A: M.1, N.2, G.280, S.281, D.282 No protein-ligand interaction detected (PLIP)

3 x HG: MERCURY (II) ION(Non-covalent)

HG.3: 3 residues within 4Å: Chain A: C.264, T.297, Y.301 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.264 HG.4: 5 residues within 4Å: Chain A: A.132, R.135, C.222, Y.223, L.226 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.222 HG.5: 3 residues within 4Å: Chain A: Q.312, C.316, S.338 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.316

2 x ZN: ZINC ION(Non-covalent)

ZN.6: 2 residues within 4Å: Chain A: E.201, Q.279 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.201 ZN.7: 3 residues within 4Å: Chain A: K.311, R.314, N.315 No protein-ligand interaction detected (PLIP)

1 x RET: RETINAL(Covalent)

RET.8: 16 residues within 4Å: Chain A: E.113, A.117, T.118, G.121, E.122, S.186, C.187, I.189, M.207, F.212, F.261, W.265, Y.268, A.269, A.292, K.296 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.117, A:T.118, A:I.189, A:F.212, A:F.261, A:W.265, A:Y.268, A:Y.268, A:A.269, A:K.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Palczewski, K. et al., Crystal structure of rhodopsin: A G protein-coupled receptor. Science (2000)

Release Date

2000-08-04

Peptides

RHODOPSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

RHODOPSIN

Related Entries With Identical Sequence