SMTL ID : 7zbe.1

Dark state crystal structure of bovine rhodopsin in Lipidic Cubic Phase (SwissFEL)

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.80 Å
Oligo State
homo-dimer
Ligands
2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
2 x ACE: ACETYL GROUP(Non-functional Binders)
2 x RET: RETINAL(Covalent)
2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x DAO: LAURIC ACID(Non-covalent)
13 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
2 x PLM: PALMITIC ACID(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Gruhl, T. et al., Ultrafast structural changes direct the first molecular events of vision. Nature (2023)
Release Date
2023-03-29
Peptides
Rhodopsin: AB
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Membrane
We predict this structure to be a membrane protein.