SMTL ID : 7n9j.1

Crystal structure of H2DB in complex with HSF2 melanoma neoantigen

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TYR- GLY- PHE- ARG- ASN- VAL- VAL- HIS- ILE: Heat shock factor protein 2(Non-covalent)

TYR-GLY-PHE-ARG-ASN-VAL-VAL-HIS-ILE.1: 27 residues within 4Å: Chain A: M.6, Y.8, Y.60, R.63, E.64, K.67, G.70, Q.71, W.74, F.75, V.77, S.78, N.81, L.82, Y.85, Q.98, Y.124, T.144, K.147, W.148, S.151, H.156, Y.157, Y.160, E.164, W.168, Y.172 44 PLIP interactions: 44 interactions with chain A Hydrophobic interactions: A:W.74, A:W.74, A:V.77, A:L.82, A:Y.85, A:W.148, A:Y.157, A:Y.157, A:Y.160, A:Y.160, A:E.164, A:E.164, A:W.168, A:W.168 Hydrogen bonds: A:Y.8, A:E.64, A:K.67, A:G.70, A:Q.71, A:Q.71, A:S.78, A:N.81, A:Q.98, A:Q.98, A:T.144, A:K.147, A:Y.160 Water bridges: A:E.64, A:Q.66, A:G.70, A:G.70, A:Q.73, A:Q.73, A:S.100, A:S.100, A:S.100, A:Y.157, A:Y.157, A:Y.157, A:Y.157, A:Y.160 Salt bridges: A:K.147 pi-Stacking: A:W.168 pi-Cation interactions: A:K.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Structure of the complex between H2DB and melanoma HSF2 neoantigen YGFRNVVHI. To be Published

Release Date

2022-06-22

Peptides

H-2 class I histocompatibility antigen, D-B alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H-2 class I histocompatibility antigen, D-B alpha chain

Beta-2-microglobulin

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