SMTL ID : 1fjs.1

CRYSTAL STRUCTURE OF THE INHIBITOR ZK-807834 (CI-1031) COMPLEXED WITH FACTOR XA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.56, N.58, Q.61, E.63, E.66 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.56, A:N.58, A:Q.61, A:E.66, H2O.1

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: A.67, H.69, I.98, T.99, R.101 Ligand excluded by PLIP

1 x Z34: N-[2-[5-[AMINO(IMINO)METHYL]-2-HYDROXYPHENOXY]-3,5-DIFLUORO-6-[3-(4,5-DIHYDRO-1-METHYL-1H-IMIDAZOL-2-YL)PHENOXY]PYRIDIN-4-YL]-N-METHYLGLYCINE(Non-covalent)

Z34.3: 16 residues within 4Å: Chain A: K.82, E.83, T.84, Y.85, F.162, D.179, A.180, C.181, Q.182, S.185, V.203, W.205, G.206, G.208, C.209, G.216 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.203, A:W.205 Hydrogen bonds: A:D.179, A:A.180, A:Q.182, A:G.206, A:G.208 Water bridges: A:S.185, A:S.185, A:S.185 pi-Stacking: A:Y.85, A:Y.85, A:F.162

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: P.110, E.111, R.112, L.225, K.226 Ligands: GOL.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.112 Water bridges: A:D.113, A:L.225, A:K.226 GOL.5: 5 residues within 4Å: Chain A: E.116, M.120, R.153, F.169, K.220 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.151, A:K.220 Water bridges: A:R.153, A:C.170, A:K.220 GOL.6: 5 residues within 4Å: Chain A: I.75, K.76, H.77, N.78, W.227 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.78 Water bridges: A:K.76 GOL.7: 6 residues within 4Å: Chain A: L.109, P.110, E.111 Chain B: F.13, R.27 Ligands: GOL.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.110 GOL.8: 7 residues within 4Å: Chain A: D.113, W.114, S.117, T.118 Chain B: C.3, C.14, H.15 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.117, A:T.118, A:T.118 Water bridges: A:E.111, B:E.16, B:E.16 GOL.9: 4 residues within 4Å: Chain B: P.40, G.42, P.43, P.45 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.42, B:Q.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adler, M. et al., Preparation, characterization, and the crystal structure of the inhibitor ZK-807834 (CI-1031) complexed with factor Xa. Biochemistry (2000)

Release Date

2000-10-04

Peptides

COAGULATION FACTOR XA: A
COAGULATION FACTOR XA: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

COAGULATION FACTOR XA

COAGULATION FACTOR XA

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