SMTL ID : 1fz8.1

METHANE MONOOXYGENASE HYDROXYLASE, FORM II COCRYSTALLIZED WITH DIBROMOMETHANE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-2-2-mer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: E.114, E.144, H.147 Ligands: FE.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.114, A:E.144, A:H.147, H2O.4, H2O.10 FE.2: 5 residues within 4Å: Chain A: E.144, E.209, E.243, H.246 Ligands: FE.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.144, A:E.209, A:E.243, A:H.246, H2O.10 FE.7: 4 residues within 4Å: Chain B: E.114, E.144, H.147 Ligands: FE.8 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.114, B:E.144, B:H.147, H2O.14, H2O.14 FE.8: 6 residues within 4Å: Chain B: Q.140, E.144, E.209, E.243, H.246 Ligands: FE.7 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.144, B:E.209, B:E.243, B:H.246, H2O.14

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 1 residues within 4Å: Chain A: N.527 No protein-ligand interaction detected (PLIP) CA.12: 1 residues within 4Å: Chain C: D.348 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:D.348, H2O.24, H2O.24, H2O.24, H2O.29 CA.13: 2 residues within 4Å: Chain C: D.376, D.378 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.376, C:D.376, C:D.378, C:D.378

10 x 2BM: DIBROMOMETHANE(Non-covalent)

2BM.4: 8 residues within 4Å: Chain A: T.102, V.105, L.289, Y.292, G.293, Y.347, F.359, L.361 No protein-ligand interaction detected (PLIP) 2BM.5: 6 residues within 4Å: Chain A: V.106, F.109, L.110, M.184, L.216, L.289 No protein-ligand interaction detected (PLIP) 2BM.6: 6 residues within 4Å: Chain A: W.99, V.106, L.216, L.286, L.289, F.290 No protein-ligand interaction detected (PLIP) 2BM.9: 5 residues within 4Å: Chain B: V.106, F.109, L.110, L.216, L.289 No protein-ligand interaction detected (PLIP) 2BM.10: 6 residues within 4Å: Chain B: W.99, V.106, L.216, L.286, L.289, F.290 No protein-ligand interaction detected (PLIP) 2BM.11: 7 residues within 4Å: Chain B: T.102, L.289, Y.292, G.293, Y.347, F.359, L.361 No protein-ligand interaction detected (PLIP) 2BM.14: 6 residues within 4Å: Chain C: E.116, N.282, Q.283, T.286 Chain D: Y.119, F.123 No protein-ligand interaction detected (PLIP) 2BM.15: 7 residues within 4Å: Chain C: T.286, Q.289, I.290, Q.293 Chain D: R.122, Q.125, G.126 No protein-ligand interaction detected (PLIP) 2BM.16: 7 residues within 4Å: Chain C: R.122, Q.125, G.126 Chain D: T.286, Q.289, I.290, Q.293 No protein-ligand interaction detected (PLIP) 2BM.17: 6 residues within 4Å: Chain C: Y.119, F.123 Chain D: E.116, N.282, Q.283, T.286 1 PLIP interactions: 1 interactions with chain D Halogen bonds: D:E.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whittington, D.A. et al., Xenon and halogenated alkanes track putative substrate binding cavities in the soluble methane monooxygenase hydroxylase. Biochemistry (2001)

Release Date

2001-04-27

Peptides

METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN: AB
METHANE MONOOXYGENASE COMPONENT A, BETA CHAIN: CD
METHANE MONOOXYGENASE COMPONENT A, GAMMA CHAIN: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN

METHANE MONOOXYGENASE COMPONENT A, BETA CHAIN

METHANE MONOOXYGENASE COMPONENT A, GAMMA CHAIN

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