SMTL ID : 1xmf.1

Structure of Mn(II)-Soaked Apo Methane Monooxygenase Hydroxylase Crystals from M. capsulatus (Bath)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

hetero-2-2-2-mer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: E.114, E.144, H.147, E.243 Ligands: MN.2 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.114, A:E.144, A:H.147, A:E.243, H2O.5, H2O.5 MN.2: 6 residues within 4Å: Chain A: Q.140, E.144, E.209, E.243, H.246 Ligands: MN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.144, A:E.209, A:E.243, A:H.246, H2O.5 MN.4: 5 residues within 4Å: Chain B: E.114, E.144, H.147, E.243 Ligands: MN.5 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.114, B:E.144, B:H.147, B:E.243, H2O.13, H2O.18 MN.5: 6 residues within 4Å: Chain B: Q.140, E.144, E.209, E.243, H.246 Ligands: MN.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.144, B:E.209, B:E.243, B:H.246, H2O.18

4 x CA: CALCIUM ION(Non-covalent)

CA.3: 1 residues within 4Å: Chain A: N.527 No protein-ligand interaction detected (PLIP) CA.6: 2 residues within 4Å: Chain C: D.347, E.349 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.347, H2O.24, H2O.24 CA.7: 2 residues within 4Å: Chain C: D.375, D.377 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.375, C:D.375, C:D.377, H2O.24 CA.8: 1 residues within 4Å: Chain C: E.221 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.221, H2O.23, H2O.23, H2O.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sazinsky, M.H. et al., Preparation and X-ray Structures of Metal-Free, Dicobalt and Dimanganese Forms of Soluble Methane Monooxygenase Hydroxylase from Methylococcus capsulatus (Bath). Biochemistry (2004)

Release Date

2005-01-18

Peptides

Methane monooxygenase component A alpha chain: AB
Methane monooxygenase component A beta chain: CD
Methane monooxygenase component A gamma chain: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Methane monooxygenase component A alpha chain

Methane monooxygenase component A beta chain

Methane monooxygenase component A gamma chain

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