SMTL ID : 1xvg.1

soluble methane monooxygenase hydroxylase: bromoethanol soaked structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

hetero-2-2-2-mer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: E.114, E.144, H.147 Ligands: FE.2, BRJ.4 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.114, A:E.144, A:H.147, H2O.8, H2O.12 FE.2: 7 residues within 4Å: Chain A: Q.140, E.144, E.209, E.243, H.246 Ligands: FE.1, BRJ.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.144, A:E.209, A:E.243, A:H.246, H2O.12 FE.8: 5 residues within 4Å: Chain B: E.114, E.144, H.147 Ligands: FE.9, BRJ.10 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.114, B:E.144, B:H.147, H2O.13, H2O.15 FE.9: 7 residues within 4Å: Chain B: Q.140, E.144, E.209, E.243, H.246 Ligands: FE.8, BRJ.10 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.144, B:E.209, B:E.243, B:H.246, H2O.13

4 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain A: N.527 Chain E: R.162 No protein-ligand interaction detected (PLIP) CA.14: 1 residues within 4Å: Chain C: E.222 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:E.222, H2O.23, H2O.24, H2O.32, H2O.33 CA.15: 1 residues within 4Å: Chain C: D.348 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.348, H2O.33, H2O.33 CA.16: 2 residues within 4Å: Chain C: D.376, D.378 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.376, C:D.376, C:D.378, C:D.378, H2O.34

12 x BRJ: 2-BROMOETHANOL(Non-covalent)

BRJ.4: 13 residues within 4Å: Chain A: L.110, G.113, E.114, A.117, E.144, F.188, F.192, L.204, E.209, T.213, E.243 Ligands: FE.1, FE.2 No protein-ligand interaction detected (PLIP) BRJ.5: 6 residues within 4Å: Chain A: V.106, F.109, L.110, M.184, L.216, L.289 No protein-ligand interaction detected (PLIP) BRJ.6: 6 residues within 4Å: Chain A: K.98, E.101, T.102, L.289, G.293, L.361 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.98 BRJ.7: 10 residues within 4Å: Chain A: L.62, I.63, A.64, Y.67, N.135, L.138, A.139 Chain C: F.184, I.187, Q.191 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:A.64, A:N.135, C:Q.191, C:Q.191 BRJ.10: 13 residues within 4Å: Chain B: L.110, G.113, E.114, A.117, E.144, F.188, F.192, L.204, E.209, T.213, E.243 Ligands: FE.8, FE.9 1 PLIP interactions: 1 interactions with chain B Water bridges: B:T.213 BRJ.11: 8 residues within 4Å: Chain B: V.106, F.109, L.110, M.184, Y.281, V.285, L.286, L.289 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.110 BRJ.12: 6 residues within 4Å: Chain B: T.102, M.288, L.289, G.293, Y.347, L.361 No protein-ligand interaction detected (PLIP) BRJ.13: 10 residues within 4Å: Chain B: L.62, I.63, A.64, Y.67, N.135, L.138, A.139 Chain D: F.184, I.187, Q.191 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:Q.191, D:Q.191, B:A.64, B:N.135 BRJ.17: 6 residues within 4Å: Chain C: E.116, N.282, Q.283, T.286, Y.287 Chain D: Y.119 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.282, C:T.286 BRJ.18: 7 residues within 4Å: Chain C: Y.119, F.123 Chain D: E.116, N.282, Q.283, T.286, Y.287 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.282 BRJ.19: 6 residues within 4Å: Chain C: L.102, Q.289, I.290, Q.293 Chain D: R.122, Q.125 No protein-ligand interaction detected (PLIP) BRJ.20: 7 residues within 4Å: Chain C: R.122, Q.125, G.126 Chain D: T.286, Q.289, I.290, Q.293 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sazinsky, M.H. et al., Product Bound Structures of the Soluble Methane Monooxygenase Hydroxylase from Methylococcus capsulatus (Bath): Protein Motion in the Alpha-Subunit. J.Am.Chem.Soc. (2005)

Release Date

2005-05-03

Peptides

Methane monooxygenase component A alpha chain: AB
Methane monooxygenase component A beta chain: CD
Methane monooxygenase component A gamma chain: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Methane monooxygenase component A alpha chain

Methane monooxygenase component A beta chain

Methane monooxygenase component A gamma chain

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