SMTL ID : 1xve.1

soluble methane monooxygenase hydroxylase: 3-bromo-3-butenol soaked structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-2-2-2-mer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 7 residues within 4Å: Chain A: Q.140, E.144, E.209, E.243, H.246 Ligands: FE.2, 3BB.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.144, A:E.209, A:E.243, A:H.246, H2O.1 FE.2: 5 residues within 4Å: Chain A: E.114, E.144, H.147 Ligands: FE.1, 3BB.4 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.114, A:E.144, A:H.147, H2O.1, H2O.1 FE.8: 7 residues within 4Å: Chain B: Q.140, E.144, E.209, E.243, H.246 Ligands: FE.9, 3BB.10 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.144, B:E.209, B:E.243, B:H.246, H2O.5 FE.9: 5 residues within 4Å: Chain B: E.114, E.144, H.147 Ligands: FE.8, 3BB.10 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.114, B:E.144, B:H.147, H2O.5, H2O.5

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 1 residues within 4Å: Chain A: N.527 No protein-ligand interaction detected (PLIP) CA.13: 1 residues within 4Å: Chain C: E.222 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.222, H2O.10

10 x 3BB: 3-BROMOBUT-3-EN-1-OL(Non-covalent)

3BB.4: 13 residues within 4Å: Chain A: L.110, G.113, E.114, A.117, E.144, F.188, F.192, L.204, E.209, T.213, E.243 Ligands: FE.1, FE.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.110, A:A.117, A:F.188, A:L.204 3BB.5: 7 residues within 4Å: Chain A: F.109, L.110, M.184, L.216, F.282, V.285, L.289 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.109, A:L.289 3BB.6: 6 residues within 4Å: Chain A: L.405, F.408, I.409, P.414, I.415, P.522 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.408, A:I.409, A:I.415 Hydrogen bonds: A:I.415 3BB.7: 9 residues within 4Å: Chain A: K.98, E.101, T.102, M.288, L.289, Y.347, F.359, R.360, L.361 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.359, A:L.361 Hydrogen bonds: A:T.102, A:R.360 Halogen bonds: A:M.288 3BB.10: 13 residues within 4Å: Chain B: L.110, G.113, E.114, A.117, E.144, F.188, F.192, E.209, T.213, E.243, H.246 Ligands: FE.8, FE.9 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.110, B:A.117, B:F.188 3BB.11: 9 residues within 4Å: Chain B: V.106, F.109, L.110, M.184, L.216, V.220, F.282, L.286, L.289 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.109, B:L.216 3BB.12: 9 residues within 4Å: Chain B: K.98, E.101, T.102, M.288, L.289, Y.347, F.359, R.360, L.361 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.359, B:L.361 Hydrogen bonds: B:R.360 Halogen bonds: B:M.288 3BB.14: 7 residues within 4Å: Chain C: R.122, Q.125, G.126 Chain D: L.102, T.286, I.290, Q.293 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:Q.125 Hydrophobic interactions: D:T.286, D:I.290 3BB.15: 6 residues within 4Å: Chain C: V.39, T.40, Y.55, D.94, F.96, R.99 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:V.39, C:Y.55 Halogen bonds: C:F.96 3BB.16: 5 residues within 4Å: Chain C: L.102, Q.289, Q.293 Chain D: R.122, Q.125 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:L.102, D:R.122 Hydrogen bonds: D:Q.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sazinsky, M.H. et al., Product Bound Structures of the Soluble Methane Monooxygenase Hydroxylase from Methylococcus capsulatus (Bath): Protein Motion in the Alpha-Subunit. J.Am.Chem.Soc. (2005)

Release Date

2005-05-03

Peptides

Methane monooxygenase component A alpha chain: AB
Methane monooxygenase component A beta chain: CD
Methane monooxygenase component A gamma chain: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Methane monooxygenase component A alpha chain

Methane monooxygenase component A beta chain

Methane monooxygenase component A gamma chain

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