SMTL ID : 1fza.1

CRYSTAL STRUCTURE OF FIBRINOGEN FRAGMENT D

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 2 residues within 4Å: Chain B: L.227, N.231 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.227 Hydrogen bonds: B:N.231, B:N.231 NAG.3: 2 residues within 4Å: Chain E: L.227, N.231 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:L.227 Hydrogen bonds: E:N.231, E:N.231

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain C: D.231, D.233, F.235, G.237 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.231, C:D.233, C:F.235, C:G.237 CA.4: 4 residues within 4Å: Chain F: D.231, D.233, F.235, G.237 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:D.231, F:D.233, F:F.235, F:G.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spraggon, G. et al., Crystal structures of fragment D from human fibrinogen and its crosslinked counterpart from fibrin. Nature (1997)

Release Date

1997-12-03

Peptides

FIBRINOGEN: AD
FIBRINOGEN: BE
FIBRINOGEN: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

E
E

C
C

F
F

FIBRINOGEN

FIBRINOGEN

FIBRINOGEN

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