SMTL ID : 2hod.1 (3 other biounits)

Crystal Structure of Fragment D from Human Fibrinogen Complexed with Gly-hydroxyPro-Arg-Pro-amide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x GLY- HYP- ARG- PRO- NH2: Gly-hydroxyPro-Arg-Pro-amide peptide ligand(Non-covalent)

GLY-HYP-ARG-PRO-NH2.1: 14 residues within 4Å: Chain B: L.227, N.231, M.234, T.235, W.252, E.264, D.265, R.273, C.274, H.275, T.298, D.299, M.305, S.310 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:T.235, B:W.252, B:R.273 Hydrogen bonds: B:N.231, B:R.273, B:R.273, B:C.274, B:H.275, B:H.275 Salt bridges: B:E.264, B:D.265 GLY-HYP-ARG-PRO-NH2.2: 11 residues within 4Å: Chain C: F.207, D.209, D.213, T.217, F.234, Q.241, K.250, C.251, H.252, Y.275, D.276 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:F.234 Hydrogen bonds: C:D.209, C:Q.241, C:K.250, C:K.250, C:C.251, C:H.252, C:D.276, C:D.276, C:D.276

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain B: M.228, N.231 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:M.228

2 x CA: CALCIUM ION(Non-covalent)

CA.4: 3 residues within 4Å: Chain B: D.248, D.250, W.252 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.248, B:D.250, B:W.252 CA.5: 4 residues within 4Å: Chain C: D.230, D.232, F.234, G.236 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:F.234, C:G.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

 - 

Release Date

2007-05-29

Peptides

Fibrinogen alpha chain: A
Fibrinogen beta chain: B
Fibrinogen, gamma polypeptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Fibrinogen alpha chain

Fibrinogen beta chain

Fibrinogen, gamma polypeptide

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