SMTL ID : 2hpc.4 (3 other biounits)

Crystal structure of fragment D from Human Fibrinogen Complexed with Gly-Pro-Arg-Pro-amide.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x GLY- PRO- ARG- PRO- NH2: Gly-Pro-Arg-Pro-amide peptide ligand(Non-covalent)

GLY-PRO-ARG-PRO-NH2.1: 12 residues within 4Å: Chain B: L.227, N.231, M.234, W.252, E.264, D.265, R.273, C.274, H.275, T.298, D.299, M.305 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.227, B:W.252, B:R.273 Hydrogen bonds: B:R.273, B:H.275, B:D.299 Salt bridges: B:E.264, B:D.265 GLY-PRO-ARG-PRO-NH2.2: 12 residues within 4Å: Chain C: F.207, D.213, T.217, F.234, Q.241, D.242, K.250, C.251, H.252, Y.275, D.276, R.287 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:F.234, C:F.234, C:K.250 Hydrogen bonds: C:Q.241, C:K.250, C:H.252, C:D.276 Salt bridges: C:D.242 pi-Cation interactions: C:Y.275

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain B: M.228, N.231 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:M.228

3 x CA: CALCIUM ION(Non-covalent)

CA.4: 5 residues within 4Å: Chain B: D.248, D.250, W.252, L.253, T.254 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.248, B:D.250, B:W.252 CA.5: 4 residues within 4Å: Chain B: D.128, G.130, Y.245 Chain C: E.44 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Metal complexes: C:E.44, B:G.130 CA.6: 5 residues within 4Å: Chain C: D.230, D.232, F.234, E.235, G.236 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.230, C:D.232, C:F.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

 - 

Release Date

2007-05-29

Peptides

Fibrinogen alpha chain: A
Fibrinogen beta chain: B
Fibrinogen, gamma polypeptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
K

C
L

Fibrinogen alpha chain

Fibrinogen beta chain

Fibrinogen, gamma polypeptide

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