SMTL ID : 1g6t.1

STRUCTURE OF EPSP SYNTHASE LIGANDED WITH SHIKIMATE-3-PHOSPHATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 11 residues within 4Å: Chain A: K.22, N.94, A.95, G.96, T.97, R.124, Q.171, E.341, K.411 Ligands: S3P.2, FMT.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.96, A:T.97, A:Q.171 Water bridges: A:K.22, A:K.22, A:R.100, A:R.124, A:Q.171 Salt bridges: A:K.22, A:R.124, A:K.411

1 x S3P: SHIKIMATE-3-PHOSPHATE(Non-covalent)

S3P.2: 14 residues within 4Å: Chain A: K.22, S.23, R.27, T.97, S.169, S.170, Q.171, S.197, Y.200, D.313, N.336, K.340 Ligands: PO4.1, FMT.3 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:Q.171, A:Y.200, A:Y.200, A:Y.200 Hydrogen bonds: A:S.169, A:S.170, A:Q.171, A:Q.171, A:S.197, A:S.197, A:D.313, A:N.336, A:K.340, A:K.340 Water bridges: A:S.169, A:S.169, A:S.170, A:Y.200, A:R.344, A:R.344 Salt bridges: A:R.27, A:K.340

13 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 8 residues within 4Å: Chain A: K.22, D.313, E.341, R.344, H.385, R.386 Ligands: PO4.1, S3P.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.22, A:E.341, A:R.344, A:R.344, A:R.386 FMT.4: 5 residues within 4Å: Chain A: N.55, A.56, E.89, L.90, F.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.91 Water bridges: A:E.89 FMT.5: 4 residues within 4Å: Chain A: T.58, V.62, S.63, Y.64 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.62, A:Y.64 FMT.6: 3 residues within 4Å: Chain A: A.380, T.381, Y.382 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.381, A:Y.382 FMT.7: 4 residues within 4Å: Chain A: T.65, L.66, S.67, R.72 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.72, A:R.72 Water bridges: A:T.65, A:T.65, A:T.65 FMT.8: 4 residues within 4Å: Chain A: K.373, L.374, S.397, D.398 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.374, A:D.398 Water bridges: A:D.398 FMT.9: 5 residues within 4Å: Chain A: P.8, I.9, A.10, Q.425, A.426 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.10 FMT.10: 4 residues within 4Å: Chain A: D.13, G.14, T.259, K.261 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.13, A:G.14 Water bridges: A:T.259, A:T.259, A:T.259 FMT.11: 3 residues within 4Å: Chain A: T.141, L.143, R.152 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.152 FMT.12: 1 residues within 4Å: Chain A: R.11 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.259 FMT.13: 2 residues within 4Å: Chain A: Y.335, H.363 No protein-ligand interaction detected (PLIP) FMT.14: 3 residues within 4Å: Chain A: T.263, D.292, Y.293 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.292 Water bridges: A:D.292 FMT.15: 4 residues within 4Å: Chain A: R.298, E.300, L.301, F.324 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.301 Water bridges: A:R.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schonbrunn, E. et al., Interaction of the herbicide glyphosate with its target enzyme 5-enolpyruvylshikimate 3-phosphate synthase in atomic detail. Proc.Natl.Acad.Sci.USA (2001)

Release Date

2001-02-07

Peptides

EPSP SYNTHASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EPSP SYNTHASE

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