SMTL ID : 1x8r.1

EPSPS liganded with the (S)-phosphonate analog of the tetrahedral reaction intermediate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x SC1: [3R-[3A,4A,5B(S*)]]-5-(1-CARBOXY-1-PHOSPHONOETHOXY)-4-HYDROXY-3-(PHOSPHONOOXY)-1-CYCLOHEXENE-1-CARBOXYLIC ACID(Non-covalent)

SC1.1: 20 residues within 4Å: Chain A: K.22, S.23, R.27, N.94, G.96, T.97, R.124, S.169, S.170, Q.171, S.197, Y.200, D.313, N.336, K.340, E.341, R.344, H.385, R.386, K.411 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:T.97, A:Y.200, A:K.340 Hydrogen bonds: A:K.22, A:S.23, A:G.96, A:T.97, A:R.124, A:R.124, A:S.169, A:S.170, A:Q.171, A:Q.171, A:S.197, A:S.197, A:N.336, A:K.340, A:E.341, A:K.411, A:K.411 Water bridges: A:R.100, A:S.169 Salt bridges: A:K.22, A:R.27, A:K.340, A:R.344, A:H.385, A:R.386, A:K.411

12 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain A: K.373, L.374, S.397, D.398 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.374, A:S.397, A:D.398 Water bridges: A:D.398 FMT.3: 3 residues within 4Å: Chain A: A.380, T.381, Y.382 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.381, A:Y.382 FMT.4: 4 residues within 4Å: Chain A: T.58, V.62, S.63, Y.64 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.62, A:Y.64 FMT.5: 2 residues within 4Å: Chain A: T.5, T.402 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.402 Water bridges: A:T.5 FMT.6: 4 residues within 4Å: Chain A: T.65, L.66, S.67, R.72 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.65, A:R.72 FMT.7: 6 residues within 4Å: Chain A: E.358, V.359, E.360, R.367, I.368, T.369 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.358, A:T.369 FMT.8: 4 residues within 4Å: Chain A: R.298, E.300, L.301, F.324 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.298, A:L.301, A:F.324 Water bridges: A:R.298, A:R.298 FMT.9: 6 residues within 4Å: Chain A: E.240, G.264, I.265, G.266, N.268, S.269 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.264, A:G.266 Water bridges: A:S.269, A:S.269 FMT.10: 4 residues within 4Å: Chain A: L.18, P.19, N.43, T.71 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.18, A:N.43 Water bridges: A:N.43 FMT.11: 2 residues within 4Å: Chain A: Y.335, H.363 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.363 FMT.12: 1 residues within 4Å: Chain A: L.88 No protein-ligand interaction detected (PLIP) FMT.13: 3 residues within 4Å: Chain A: R.332, Y.365, R.367 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.332, A:R.332, A:R.367

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Priestman, M.A. et al., Interaction of phosphonate analogues of the tetrahedral reaction intermediate with 5-enolpyruvylshikimate-3-phosphate synthase in atomic detail. Biochemistry (2005)

Release Date

2005-04-19

Peptides

3-phosphoshikimate 1-carboxyvinyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3-phosphoshikimate 1-carboxyvinyltransferase

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