SMTL ID : 2aa9.1

EPSP synthase liganded with shikimate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x SKM: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID(Non-covalent)

SKM.1: 13 residues within 4Å: Chain A: K.22, S.23, R.27, T.97, S.170, Q.171, Y.200, D.313, K.340 Ligands: FMT.2, FMT.3, FMT.4, FMT.12 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Q.171, A:Y.200, A:Y.200, A:Y.200 Hydrogen bonds: A:Q.171, A:D.313, A:D.313, A:K.340 Water bridges: A:R.124, A:S.170, A:K.340, A:R.344 Salt bridges: A:R.27

17 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 7 residues within 4Å: Chain A: K.22, D.313, E.341, R.344, H.385, R.386 Ligands: SKM.1 Ligand excluded by PLIP FMT.3: 6 residues within 4Å: Chain A: R.100, S.169, Q.171, K.340 Ligands: SKM.1, FMT.4 Ligand excluded by PLIP FMT.4: 8 residues within 4Å: Chain A: S.169, S.170, V.196, S.197, N.336, K.340 Ligands: SKM.1, FMT.3 Ligand excluded by PLIP FMT.5: 3 residues within 4Å: Chain A: A.380, T.381, Y.382 Ligand excluded by PLIP FMT.6: 3 residues within 4Å: Chain A: T.5, F.376, T.402 Ligand excluded by PLIP FMT.7: 4 residues within 4Å: Chain A: K.373, L.374, S.397, D.398 Ligand excluded by PLIP FMT.8: 5 residues within 4Å: Chain A: R.120, E.341, T.342, Y.382, N.383 Ligand excluded by PLIP FMT.9: 3 residues within 4Å: Chain A: L.60, H.83, A.84 Ligand excluded by PLIP FMT.10: 5 residues within 4Å: Chain A: T.65, L.66, S.67, R.72, E.74 Ligand excluded by PLIP FMT.11: 2 residues within 4Å: Chain A: Y.335, H.363 Ligand excluded by PLIP FMT.12: 9 residues within 4Å: Chain A: K.22, N.94, A.95, G.96, T.97, R.124, E.341, K.411 Ligands: SKM.1 Ligand excluded by PLIP FMT.13: 4 residues within 4Å: Chain A: P.81, H.83, L.108, G.109 Ligand excluded by PLIP FMT.14: 4 residues within 4Å: Chain A: T.58, V.62, S.63, Y.64 Ligand excluded by PLIP FMT.15: 1 residues within 4Å: Chain A: E.358 Ligand excluded by PLIP FMT.16: 1 residues within 4Å: Chain A: N.78 Ligand excluded by PLIP FMT.17: 7 residues within 4Å: Chain A: N.43, L.238, V.239, E.240, G.241, G.264, D.292 Ligand excluded by PLIP FMT.18: 5 residues within 4Å: Chain A: N.55, A.56, E.89, L.90, F.91 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Priestman, M.A. et al., Molecular basis for the glyphosate-insensitivity of the reaction of 5-enolpyruvylshikimate 3-phosphate synthase with shikimate. Febs Lett. (2005)

Release Date

2006-02-14

Peptides

3-phosphoshikimate 1-carboxyvinyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3-phosphoshikimate 1-carboxyvinyltransferase

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